Molecular detection systems utilizing reiterative...

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C435S091100, C435S091200

Reexamination Certificate

active

10607136

ABSTRACT:
The present invention provides methods for detecting the presence of a target molecule by generating multiple detectable oligonucleotides through reiterative enzymatic oligonucleotide synthesis events on a defined polynucleotide sequence. The methods generally comprise using a nucleoside, a mononucleotide, an oligonucleotide, or a polynucleotide, or analog thereof, to initiate synthesis of an oligonucleotide product that is substantially complementary to a target site on the defined polynucleotide sequence; optionally using nucleotides or nucleotide analogs as oligonucleotide chain elongators; using a chain terminator to terminate the polymerization reaction; and detecting multiple oligonucleotide products that have been synthesized by the polymerase. In one aspect, the invention provides a method for detecting a target protein, DNA or RNA by generating multiple detectable RNA oligoribonucleotides by abortive transcription.

REFERENCES:
patent: 3996345 (1976-12-01), Ullman et al.
patent: 4351760 (1982-09-01), Khanna et al.
patent: 4582788 (1986-04-01), Erlich
patent: 4683194 (1987-07-01), Saiki et al.
patent: 4739044 (1988-04-01), Stabinsky
patent: 4757141 (1988-07-01), Fung et al.
patent: 4786600 (1988-11-01), Kramer et al.
patent: 5130238 (1992-07-01), Malek et al.
patent: 5169766 (1992-12-01), Schuster et al.
patent: 5194370 (1993-03-01), Berninger et al.
patent: 5399491 (1995-03-01), Kacian et al.
patent: 5503979 (1996-04-01), Kramer et al.
patent: 5508178 (1996-04-01), Rose et al.
patent: 5554516 (1996-09-01), Kacian et al.
patent: 5571669 (1996-11-01), Lu et al.
patent: 5595891 (1997-01-01), Rose et al.
patent: 5597694 (1997-01-01), Munroe et al.
patent: 5648211 (1997-07-01), Fraiser et al.
patent: 5654142 (1997-08-01), Kievits et al.
patent: 5679512 (1997-10-01), Laney et al.
patent: 5683879 (1997-11-01), Laney et al.
patent: 5744308 (1998-04-01), Guillou-Bonnici et al.
patent: 5766849 (1998-06-01), McDonough et al.
patent: 5824517 (1998-10-01), Cleuziat et al.
patent: 5846723 (1998-12-01), Kim et al.
patent: 5858801 (1999-01-01), Brizzolara
patent: 5888819 (1999-03-01), Goelet et al.
patent: 6008334 (1999-12-01), Hanna
patent: 6107037 (2000-08-01), Sousa et al.
patent: 6107039 (2000-08-01), Hanna
patent: 6114519 (2000-09-01), Cole et al.
patent: 6251594 (2001-06-01), Gonzalgo et al.
patent: 6268131 (2001-07-01), Kang et al.
patent: 7045319 (2006-05-01), Hanna
patent: 2002/0168641 (2002-11-01), Mortensen et al.
patent: 2003/0099950 (2003-05-01), Hanna
patent: 2004/0054162 (2004-03-01), Hanna
patent: 2004/0137461 (2004-07-01), Hanna
patent: 2004/0157257 (2004-08-01), Hanna
patent: 2004/0175724 (2004-09-01), Hanna
patent: 2004/0234996 (2004-11-01), Hanna
patent: 2005/0064414 (2005-03-01), Hanna
patent: 2005/0214796 (2005-09-01), Hanna
patent: 2006/0204964 (2006-09-01), Hanna
patent: 0 369 775 (1990-05-01), None
patent: WO 89/01050 (1989-02-01), None
patent: WO 03/038042 (2003-05-01), None
Agrawal, S., and Tang, J.-Y., “Site-specific functionalization of oligodeoxynucleotides for non-radioactive labeling,”Tetrahedron Lett. 31:1543-1546, Pergamon Press (1990).
Chamberlin, M.J., “Bacterial DNA-Dependent RNA Polymerases,” inThe Enzymes, Boyer, P.D., ed., Academic Press, New York, N.Y. pp. 61, 84-86 (1982).
Costas, C., et al., “RNA-protein crosslinking to AMP residues at internal positions in RNA with a new photocrosslinking ATP analog,”Nucleic Acids Res. 28:1849-1858, Oxford University Press (May 2000).
Daube, S.S., and von Hippel, P.H., “Functional Transcription Elongation Complexes from Synthetic RNA-DNA Bubble Duplexes,”Science 258: 1320-1324, American Association for the Advancement of Science (1992).
Dunn, J.J., and Studier, F.W., “Complete Nucleotide Sequence of Bacteriophage T7 DNA and the Locations of T7 Genetic Elements,”J. Mol. Biol. 166:477-535, Academic Press, Inc. (1983).
Gait, M.J., et al., “Oligoribonucleotide synthesis,” inOligonucleotides and Analogues, Eckstein, F., ed., Oxford University Press, Oxford, Great Britain, pp. 25-31 (1992).
Gait, M.J., “An Introduction to Modern Methods of DNA Synthesis,” inOligonucleotide synthesis: a practical approach, Gait, M.J., ed., Oxford University Press, Oxford, Great Britain, pp. 1-22 (1984).
Geider, K., et al., “An RNA transcribed from DNA at the origin of phage fd single strand to replicative form conversion,”Proc. Natl. Acad. Sci. USA 75:645-649, National Academy Press (1978).
Guatelli, J.C., et al., “Isothermal, in vitro amplification of nucleic acids by a multienzyme reaction modeled after retroviral replication,”Proc. Natl. Acad. Sci. USA 87:1874-1878, National Academy Press (1990).
Gupta, K.C., et al., “A general method for the synthesis of 3′-sulfhydryl and phosphate group containing oligonucleotides,”Nucleic Acids Res. 19:3019-3025, Oxford University Press (1991).
Gurevich, V.V., et al., “Preparative in Vitro mRNA Synthesis Using SP6 and T7 RNA Polymerases,”Anal. Biochem. 195:207-213, Academic Press, Inc. (1991).
Hanna, M.M., “Photoaffinity Cross-Linking Methods for Studying RNA-Protein Interactions,”Methods Enzymol. 180:383-409, Academic Press, Inc. (1989).
Hanna, M.M., et al., “Probing the environment of nascent RNA inEscherichia colitranscription elongation complexes utilizing a new fluorescent ribonucleotide analog,”Nucleic Acids Res. 27:1369-1376, Oxford University Press (1999).
Hanna, M.M., et al., “Synthesis and characterization of a new photocrosslinking CTP analog and its use in photoaffinity labelingE. coliand T7 RNA polymerases,”Nucleic Acids Res. 21:2073-2079, Oxford University Press (1993).
He, B., et al., “Preparation of probe-modified RNA with 5-mercapto-UTP for analysis of protein-RNA interactions,”Nucleic Acids Res. 23:1231-1238, Oxford University Press (1995).
Kwoh, D.Y., et al., “Transcription-based amplification system and detection of amplified human immunodeficiency virus type 1 with a bead-based sandwich hybridization format,”Proc. Natl. Acad. Sci. USA 86:1173-1177, National Academy Press (1989).
Lewis, M.K., and Burgess, R.R., “Transcription of Simian Virus 40 DNA by Wheat Germ RNA Polymerase II,”J. Biol. Chem. 255:4928-4936, American Society for Biochemistry and Molecular Biology (1980).
Martin, C.T., et al., “Processivity in Early Stages of Transcription by T7 RNA Polymerase,”Biochemistry 27:3966-3974, American Chemical Society (1988).
Meyer, K.L., and Hanna, M.M., “Synthesis and Characterization of a New 5-Thiol-Protected Deoxyuridine Phosphoramidite for Site-Specific Modification of DNA,”Bioconjugate Chem. 7:401-412, American Chemical Society (1996).
Milligan, J.F., and Uhlenbeck, O.C., “Synthesis of Small RNAs Using T7 RNA Polymerase,”Methods Enzymol. 180:51-62, Academic Press, Inc. (1989).
Montemagno, C., and Bachand, G., “Constructing nanomechanical devices powered by biomolecular motors,”Nanotechnology 10:225-231, IOP Publishing, Ltd. (1999).
Mullis, K., et al., “Specific Enzymatic Amplification of DNA In Vitro: The Polymerase Chain Reaction,”Cold Spring Harb. Symp. Quant. Biol. 51:263-273, Cold Spring Harbor Laboratory (1986).
Mullis, K.B., et al., “The Polymerase Chain Reaction: Why It Works,” inPolymerase Chain Reaction, Erlich, H.A., et al., eds., Cold Spring Harbor Laboratory Press, Woodbury, N.Y., pp. 237-243 (1989).
Nelson, P.S., et al., “Bifunctional oligonucleotide probes synthesized using a novel CPG support are able to detect single base pair mutations,” Nucleic Acids Res. 17:7187-7194, Oxford University Press (1989).
Pringsheim, P., “Fluorescence of organic compounds,”in Fluorescence and phosphorescence, Pringsham, P., ed., Interscience Publishers, Inc. New York, N.Y., pp. 392-397, 420-423 (1949).
Saiki, R.K., et al., “Primer-Directed Enzymatic Amplification of DNA with a Thermostable DNA Polymerase,”Sci

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Molecular detection systems utilizing reiterative... does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Molecular detection systems utilizing reiterative..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Molecular detection systems utilizing reiterative... will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-3849526

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.