Chemistry: molecular biology and microbiology – Enzyme – proenzyme; compositions thereof; process for... – Hydrolase
Reexamination Certificate
2004-11-22
2010-12-14
Ramirez, Delia M (Department: 1652)
Chemistry: molecular biology and microbiology
Enzyme , proenzyme; compositions thereof; process for...
Hydrolase
C435S006120, C435S019000, C435S069100, C435S320100, C435S252300, C530S350000, C536S023200
Reexamination Certificate
active
07851192
ABSTRACT:
Compositions and methods are provided that relate to a modified DNA cleaving enzyme having at least 35% amino acid sequence identity with T7 Endo I. The modified enzyme includes two catalytic centers separated by a β-bridge where the β-bridge contains at least one mutation having an effect of altering enzyme cleavage activity compared to the unmodified enzyme. Activities associated with the modified DNA cleaving enzyme that can be modulated in different reaction conditions include at least one of: (a) non-sequence specific nicking activity; (b) cleaving the second strand of a duplex DNA at a preexisting nick site to produce a linear duplex with a single strand overhang; (c) non-sequence specific DNA cleavage; (d) cleaving DNA flanking a mismatch; and (e) cleavage at a cruciform structure in a DNA duplex.
REFERENCES:
patent: 5604098 (1997-02-01), Mead et al.
patent: 6340566 (2002-01-01), McCutchen-Maloney
Branden et al., Introduction to Protein Structure, Garland Publishing Inc., New York, p. 247, 1991.
Witkowski et al., Biochemistry 38:11643-11650, 1999.
Seffernick et al., J. Bacteriol. 183(8):2405-2410, 2001.
Beck et al., UniProt accession No. P20314, Feb. 1, 1991.
Aravind, et al., “Holliday junction resolvases and related nucleases: identification of new families, phletic distribution and evolutionary trajectories,”Nucleic Acids Research28(18): 3417-3432 (2000).
Déclais, et al., “The complex between a four-way DNA junction and T7 endonuclease I,”EMBO J.22:1398-1409 (2003).
Duckett, et al., “Binding of the Junction-resolving Enzyme Bacteriophage T7 Endonuclease I to DNA: Separation of Binding and Catalysis by Mutation,”J. Mol. Biol.246:95-107 (1995).
Geer, et al., “CDART: Protein Homology by Domain Architecture,”Genome Research12:1619-1623 (2002).
Guan, et al., “Changing the Enzymatic Activity of T7 Endonuclease by Mutations at the β-Bridge Site: Alteration of Substrate Specificity Profile and Metal Ion Requirements by Mutation Distant from the Catalytic Domain,”Biochemistry43:4313-4322 (2004).
Guan, et al., “Activation of Glycosylasparaginase,”J. Biol. Chem.19:1732-1737 (1996).
Hadden et al., “Crystal structure of the Holliday junction resolving enzyme T7 endonuclease I,”Nature Structural Biology8(1): 62-67 (2001).
Lilley, D.M.J., “All change at Holliday junction,”PNAS94, 9513-9515 (1997).
Mashal, et al., “Detection of mutations by cleavage of DNA heteroduplexes with bacteriophage resolvases,”Nat. Genet.9:177-183 (1995).
Parkinson, et al., “The Junction-resolving Enzyme T7 Endonuclease I: Quaternary Structure and Interaction with DNA,”J. Mol. Biol.270:169-178 (1997).
White, et al., “Recognition and Manipulation of Branched DNA Structure by Junction-resolving Enzymes,”J. Mol. Biol.269:647-664 (1997).
Database UniProt Feb. 1, 1991 “Endodeoxyribonuclease 1 (EC 3.1.21.2)(Endodeoxyribonuclease I) (Endonuclease).” retrieved from EBI accession No. UNIPROT:P20314.
Database Uniprot May 1, 2000 “Endonuclease.” retrieved from EBI accession No. UNIPROT: Q9T133.
Database Uniprot Jun. 1, 2003 “Endonuclease.” retrieved from EBI accession No. UNIPROT:Q858M4.
Dunderdale, H.J., et al.,Journal of Biological Chemistry, 269(7): 5187-5194 (1994).
Fitzgerald, M.C. et al.,Nucleic Acids Research, 20(14): 3753-3762 (1992).
Llosa, et al.,Journal of Molecular Biology, 246(1): 54-62 (1995).
Whitby, M.C., et al.,Journal of Molecula r Biology, 272(4): 509-522 (1997).
Guan Chudi
Kucera Rebecca
Kumar Sanjay
New England Biolabs Inc.
Ramirez Delia M
Strimpel Harriet M.
LandOfFree
Modified DNA cleavage enzymes and methods for use does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with Modified DNA cleavage enzymes and methods for use, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Modified DNA cleavage enzymes and methods for use will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-4161489