Mobilization of viral genomes from T-DNA using site-specific...

Chemistry: molecular biology and microbiology – Process of mutation – cell fusion – or genetic modification – Introduction of a polynucleotide molecule into or...

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C435S419000, C435S320100, C435S455000, C536S023100, C800S260000, C800S278000

Reexamination Certificate

active

07364902

ABSTRACT:
The invention relates to methods and compositions for site-specific recombinase-mediated mobilization of viral replicons and associated DNAs of interest from T-DNA. The methods of the invention compriseAgrobacterium-mediated transfer of T-DNA to a plant cell, wherein the T-DNA contains a viral replicon flanked by directly repeated target sites for a site-specific recombinase and optionally a DNA of interest linked to the viral replicon. The DNA of interest may also contain a non-identical target site for the recombinase. An expression cassette for the site-specific recombinase is present on the T-DNA or the plant genome, or is transiently introduced into the plant cell. Expression of the site-specific recombinase in the plant cell results in excision of the viral replicon and the associated DNA of interest. The viral replicon and DNA of interest are then replicated to high copy number in the host plant cell. The compositions of the invention comprise nucleic acids, such as T-DNAs containing a viral DNA flanked by directly repeated target sites for a site-specific recombinase. The nucleic acids of the invention may additionally contain expression cassettes encoding the cognate site-specific recombinase for the target sites flanking the viral genome. The compositions of the invention further compriseAgrobacteriumcontaining the nucleic acids of the invention.

REFERENCES:
patent: 5677177 (1997-10-01), Wahl et al.
patent: 5744336 (1998-04-01), Hodges et al.
patent: 6010884 (2000-01-01), Griffiths et al.
patent: 6171861 (2001-01-01), Hartley et al.
patent: 6187994 (2001-02-01), Baszczynski et al.
patent: 6262341 (2001-07-01), Baszczynski et al.
patent: 6300545 (2001-10-01), Baszczynski et al.
patent: 6331661 (2001-12-01), Baszczynski et al.
patent: 6455315 (2002-09-01), Baszczynski et al.
patent: 6458594 (2002-10-01), Baszczynski et al.
patent: 6541231 (2003-04-01), Baszczynski et al.
patent: 6552248 (2003-04-01), Baszczynski et al.
patent: 6573425 (2003-06-01), Baszczynski et al.
patent: 6624297 (2003-09-01), Baszczynski et al.
patent: 6774279 (2004-08-01), Dymecki
patent: 2003/0119166 (2003-06-01), Baszczynski et al.
patent: 2 174 995 (1986-11-01), None
patent: WO 92/15694 (1992-09-01), None
patent: WO 93/01283 (1993-01-01), None
patent: WO 93/17116 (1993-09-01), None
patent: WO 94/17176 (1994-08-01), None
patent: WO 95/00555 (1995-01-01), None
patent: WO 95/15388 (1995-06-01), None
patent: WO 96/04393 (1996-02-01), None
patent: WO 97/09436 (1997-03-01), None
patent: WO 97/09439 (1997-03-01), None
patent: WO 97/13401 (1997-04-01), None
patent: WO 97/37012 (1997-10-01), None
patent: WO 97/47758 (1997-12-01), None
patent: WO 99/23202 (1999-05-01), None
patent: WO 99/55851 (1999-11-01), None
Vergust et al (Site-specific integration of Agrobacterium T-DNA inArabidopsis thalianamediate by Cre recombinase. Nucleic Acids Research, 1998. 26(11)2729-2734).
Dale, et al., “Intra- and Intermolecular Site-Specific Recombination in Plant Cells Mediated by Bacteriophage P1 Recombinase”,Gene, 1990, 91:79-85.
U.S. Appl. No. 09/455,051, filed Dec. 6, 1999, Baszczynski et al.
U.S. Appl. No. 10/430,907, filed May 7, 2003, Baszczynski et al.
U.S. Appl. No. 10/430,908, filed May 7, 2003, Baszczynski et al.
U.S. Appl. No. 10/440,030, filed May 16, 2003, Baszczynski et al.
U.S. Appl. No. 10/639,751, filed Aug. 12, 2003, Baszczynski et al.
Abremski, K.E., and R. Hoess, “Evidence for a Second Conserved Arginine Residue in the Integrase Family of Recombination Proteins,”Protein Engineering, 1992, pp. 87-91, vol. 5(1), Oxford University Press.
Albert et al., Site-Specific Integration of DNA into Wild-Type and Mutant Lox Sites Placed in the Plant Genome,The Plant Journal.(Jan. 18, 1995) pp. 649-659 vol. 7, No. 4, Plant Gene Expression Center, USDA/ARS-UC Berkeley, Albany, CA.
Araki et al,. “Targeted Integration of DNA Using Mutant Lox Sites in Embryonic Stem Cells,”Nucleic Acids Research(1997) pp. 868-872 vol. 25(4) Dept. Dev. Genetics, Institute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto Japan & Gene Tech. Center, Kumanoto, Japan.
Bethke et al., “Segmental Genomic Replacement by Crer-Mediated Recombination: Genotoxic Stress Activation of the P53 Promoter in Single-Copy Transformants,”Nucleic Acids Research(1997) pp. 2828-2834 vol. 25(14) National Institutes of Health, National Institute of Diabetes, Digestive and Kidney Disease, Bethesda, MD.
Campbell et al., Codon Usage in Higher Plants, Green Algae, and Cyanobacteria, Plant Physiol., 1990, pp. 1-11, vol. 92, Houghton, Michigan.
Campbell, W.H., and G. Gowri, “Condon Usage in Higher Plants, Green Algae, and Cyanobacteria,”Plant Physiol., 1990, pp. 1-11, vol. 92.
Chiu, W., et al., “Engineered GFP as a Vital Reporter in Plants,”Current Biol., 1996, pp. 325-330, vol. 6(3).
Czako et al. (1997) “Negative Selection Markers for Plants”, Technology Transfer of Plant Biotechnology, Chapter 6, CRC Press, Inc., Edited by Peter M. Gresshoff, Plant Molecular Genetics, Institute of Agriculture, Center for Legume Research, The University of Tennessee, Knoxville, Tennessee, pp. 67-93.
Dale et al., Gene Transfer with Susequent Removal of the Selection Gene from the Host Genome, Proc. Natl. Acad. Sci. USA (Dec. 1991) pp. 10558-10562, vol. 88: Plant Gene Expression Center, USDOA/Agr. Res. Svs., Albany, CA and Dept. Plant Pathology, Univ: of Calif, Berkeley, California.
Dasgupta et al. (1991) “Rice Tungro Bacilliform Virus DNA Independently Infects Rice AfterAgrobacterium-Mediated Transfer”,Journal of General Virology 72:1215-1221.
Dildine, S.L., et al., “A Chimeric Ty3/Moloney Murine Leukemia Virus Integrase Protein is Active In Vivo,”J. of Virology, 1998, pp. 4297-4307, vol. 72(5).
Esposito, M.D., et al., “Recombinators, Recominases and Recombination Genes of Yeasts,”Curr. Genetics, 1994, pp. 1-11, vol. 25.
Feil et al., “Regulation of Cre Recombinase Activity by Mutated Estrogen Receptor Ligand-Binding Domaiins,”Biochem. and BioPhy. Res. Comm(1997).pp. 172-757, vol. 237 Institute de Genetique et de Biologie Moleculaire et Cellulaire, College de France, Strasbourg, France.
Fisch, I., “A Strategy of Exon Shuffling for Making Large Peptide Repertoires Displayed on Filamentous Bacteriophage,”Proc. Natl. Acad. Sci., 1996, vol. 93, pp. 7761-7766.
Fry, et al., “Transformation ofBrassica napuswithAbrobacterium tumefaciensBased Vectors,”Plant Cell Rep., 1987, pp. 321-325, vol. 6.
Golic et al., FLP-Mediated DNA Mobilization to Specific Target sites inDrosophiliaChromosomes,Nucleic Acids Research(1997) pp. 3665-3671 vol. 25(18) Dept. of Biol., Univ. of Utal, Salt Lake City, UT, Inst. Of Path., Case Western Res. Univ., Cleveland, OH, Howard Hughes Med. Inst., Univ. of Chicago, Chicago, IL.
Grimsley et al. (1988) “Meristematic Tissues of Maize Plants are Most Susceptible to Agroinfection with Maize Streak Virus”,Bio/Technology 6:185-189.
Grimsley, et al., “Agroinfection, an Alternative Route for Viral Invection of Plants by Using the Ti Plasmid,”Proc. Natl. Acad. Sci., USA, 1986, pp. 3282-3286, vol. 83.
Hayes, et al., “Agroinfection of Nicotiana spp. With Cloned DNA of Tomato Golden Mosaic Virus,”J. Gen. Virol., 1988, pp. 1487-1496, vol. 69, SGM.
Karreman et al. (1996) “On the Use of Double FLP Recognition Targets (FRTs) in the LTR of Retroviruses for the Construction of High Producer Cell Lines”,Nucleic Acids Research 24(9):1616-1624.
Kilby et al., FLP Recombinase in Transgenic Plants: Constitutive Activity in Stably Transformed Tobacco and Generation of Marked Cell Clones inArabidopsis, The Plant Journal(1995) pp. 637-652 vol. 8(5) Institute of Biotech., Univ. of Cambridge, Cambridge, UK.
Lloyd, A.M., and R.W. Davis, “Functional Expression of the Yeast FLP/FRT Site-Specific Recombination System inNicotiana tabacum,” Mol. Gen. Genet., 1994, pp. 653-657, vol. 242.
Logie et al., Ligand-Regulated Site-Specific Re

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Mobilization of viral genomes from T-DNA using site-specific... does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Mobilization of viral genomes from T-DNA using site-specific..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Mobilization of viral genomes from T-DNA using site-specific... will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-2776848

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.