Methylation analysis using nicking agents

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

Reexamination Certificate

active

06884586

ABSTRACT:
The present invention provides methods and compositions for nucleic acid methylation analysis using nicking agents.

REFERENCES:
patent: 4935357 (1990-06-01), Szybalski
patent: 5011769 (1991-04-01), Duck et al.
patent: 5455166 (1995-10-01), Walker
patent: 5470723 (1995-11-01), Walker et al.
patent: 5523204 (1996-06-01), Singer et al.
patent: 5547861 (1996-08-01), Nadeau et al.
patent: 5561044 (1996-10-01), Walker et al.
patent: 5624825 (1997-04-01), Walker et al.
patent: 5631147 (1997-05-01), Lohman et al.
patent: 5648211 (1997-07-01), Fraiser et al.
patent: 5702926 (1997-12-01), Fraiser et al.
patent: 5712214 (1998-01-01), Huang et al.
patent: 5733752 (1998-03-01), Lohman et al.
patent: 5736365 (1998-04-01), Walker et al.
patent: 5744311 (1998-04-01), Fraiser et al.
patent: 5756702 (1998-05-01), Lohman et al.
patent: 5811269 (1998-09-01), Nadeau et al.
patent: 5837469 (1998-11-01), Harris
patent: 5849547 (1998-12-01), Cleuziat et al.
patent: 5866336 (1999-02-01), Nazarenko et al.
patent: 5916779 (1999-06-01), Pearson et al.
patent: 5919630 (1999-07-01), Nadeau et al.
patent: 5928869 (1999-07-01), Nadeau et al.
patent: 5958700 (1999-09-01), Nadeau et al.
patent: 5962273 (1999-10-01), Durmowicz et al.
patent: 5968786 (1999-10-01), Dunn et al.
patent: 5976805 (1999-11-01), You
patent: 5985569 (1999-11-01), Foxall et al.
patent: 6004754 (1999-12-01), You
patent: 6054279 (2000-04-01), Nadeau et al.
patent: 6063604 (2000-05-01), Wick et al.
patent: 6087133 (2000-07-01), Dattagupta et al.
patent: 6191267 (2001-02-01), Kong et al.
patent: 6200756 (2001-03-01), Herman et al.
patent: 6214587 (2001-04-01), Dattagupta et al.
patent: 6218119 (2001-04-01), Kuiper et al.
patent: 6218125 (2001-04-01), Foxall et al.
patent: 6221592 (2001-04-01), Schwartz et al.
patent: 6238868 (2001-05-01), Carrino et al.
patent: 6238884 (2001-05-01), Short et al.
patent: 6258546 (2001-07-01), McMillian et al.
patent: 6316200 (2001-11-01), Nadeau et al.
patent: 20010039039 (2001-11-01), Weissman et al.
patent: 20020006643 (2002-01-01), Kayyem et al.
patent: 0500224 (1992-08-01), None
patent: 0585660 (1994-03-01), None
patent: 0640691 (1995-03-01), None
patent: 0819768 (1998-01-01), None
patent: 0878553 (1998-11-01), None
patent: WO 8910415 (1989-11-01), None
patent: WO 9525180 (1995-09-01), None
patent: WO9711196 (1997-03-01), None
patent: WO9735026 (1997-09-01), None
patent: WO9800566 (1998-01-01), None
patent: WO9949081 (1999-09-01), None
patent: WO 0015849 (2000-03-01), None
patent: WO 0018238 (2000-04-01), None
patent: WO0028084 (2000-05-01), None
patent: WO 0031294 (2000-06-01), None
patent: WO 0031300 (2000-06-01), None
patent: WO0060919 (2000-10-01), None
patent: WO0061720 (2000-10-01), None
patent: WO0061803 (2000-10-01), None
patent: WO0062036 (2000-10-01), None
patent: WO0063437 (2000-10-01), None
patent: WO 0190419 (2001-11-01), None
patent: WO 0198527 (2001-12-01), None
Marianne Frommer, Louise E. McDonald et al. A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. 1992. Proc. Natl. Acad. Sci. USA 89: pp. 1827-1831.*
Abramson et al., “Nucleic Acid Amplification Technologies,”Curr. Opin. Biotech. 4:41-47, 1993.
Akduman et al., “Evaluation of a Strand Displacement Amplification Assay (BD Probe Tech-SDA) for Detection ofNeisseria gonorrhoeaein Urine Specimens,”J. Clin. Microbiol. 40(1):281-283, Jan. 2002.
Andras et al., “Strategies for Signal Amplification in Nucleic Acid Detection,”Mol. Biotech. 19:29-44, 2001.
Badak et al., “Confirmation of the Presence ofMycobacterium tuberculosisand Other Mycobacteria in Mycobacterial Growth Indicator Tubes (MGIT) by Multiplex Strand Displacement Amplification,”J. Clin. Microbiol. 35(5):1239-43, May 1997.
Bergmann et al., “Clinical Evaluation of the BDProbeTec Strand Displacement Amplification Assay for Rapid Diagnosis of Tuberculosis,”J. of Clin. Microbiol. 36(9):2766-2768, Sep. 1998.
Besnier et al., “Converting MlyI Endonuclease Into a Nicking Enzyme by Changing Its Oligomerization State,”EMBO Reports 2(9): 782-786, 2001.
Chan et al., “Performance Characteristics of the Becton Dickinson ProbeTec System for Direct Detection ofChlamydia trachomatisandNeisseria gonorrhoeaein Male and Female Urine Specimens in Comparison With the Roche Cobas System,”Arch. Pathol. Lab. Med. 124:1649-1652, Nov. 2000.
Down et al., “Detection ofMycobacterium tuberculosisin Respiratory Specimens by Strand Displacement Amplification of DNA,”J. Clin. Microbiol. 34(4):860-865, Apr. 1996.
Edman et al., “Pathogen Analysis and Genetic Predisposition Testing Using Microelectronic Arrays and Isothermal Amplification,”J. Invest. Med. 48(2):93-101, Mar. 2000.
Gelb et al., “Editorial Summary of the Pre-symposium Workshop on the Contemporary Assessment of Technologies,”Biologicals 24:177-186, 1996.
Hellyer et al., “Detection of ViableMycobacterium tuberculosisby Reverse Transcriptase-Strand Displacement Amplification of mRNA,”J. Clin. Microbiol. 37(3):518-523, Mar. 1999.
Hellyer et al., “Specificity of IS6110-Based Amplification Assays forMycobacterium tuberculosisComplex,”J. Clin. Microbiol. 34(11):2843-2846, Nov. 1996.
Hellyer et al., “Strand Displacement Amplification and the Polymerase Chain Reaction for Monitoring Response to Treatment in Patients with Pulmonary Tuberculosis,”J. Infec. Diseases 173:934-941, Apr. 1996.
Higgins et al., “The Nicking Endonuclease N.BstNBI is closely related to Type IIs Restriction Endonucleases MLyI and PleI,”Nucl. Acids Res. 29(12):2492-2501, 2001.
Huang et al., “Multiple Cleavage Activities of Endonuclease V fromThermotoga maritimaRecognition an Strand Nicking Mechanism,”Biochemistry 40:8738-8748, 2001.
Ichiyama et al., “Diagnostic Value of the Strand Displacement Amplification Method Compared to Those of Roche Amplicor PCR and Culture for Detecting Mycobacteria in Sputum Samples,”J. of Clin. Microbiol. 35(12):3082-3085, Dec. 1997.
Kim et al., “Site-Specific Cleavage of DNA-RNA Hybrids by Zinc Finger/FokI Cleavage Domain Fusions,”Gene 203:43-49, 1997.
Laken et al., “Genotyping by Mass Spectometric Analysis of Short DNA Fragments,”Nature Biotechnology 16:1352-1356, Dec. 1998.
Lavin et al, “A Mammalian Nicking Endonuclease,”Biochem. 15(11):2409-2414, 1976.
Lisby, Gorm, “Application of Nucleic Acid Amplification in Clinical Microbiology,”Mol. Biotechnol. 12:75-99, 1999.
Little et al., “Strand Displacement Amplification and Homogeneous Real-Time Detection Incorporated in a Second-Generation DNA Probe System, BDProbeTecET,”Clin. Chem. 45(6):777-784, 1999.
Little et al., “Nucleotide Sequence and Strand Displacement Amplification of the 70K Protein Gene From Mycobacteria,”Mol. and Cell. Probes 8:375-384, 1994.
Lizardi et al., “Mutation Detection and Single-Molecule Counting Using Isothermal Rolling-Circle Amplification,”Nature Genetics 19:225-232, Jul. 1998.
Mehrpouyan et al., A Rapid and Sensitive Method for Non-Isotopic Quantitation of HIV-1 RNA Using Thermophilic SDA and Flow Cytometry,Mol. and Cell. Probes 11:337-347, 1997.
Milla et al., “Use of the Restriction Enzyme AvaI and Exo-Bst Polymerase in Strand Displacement Amplification,”BioTechniques 24(3):392-396, Mar. 1998.
Morgan et al., “Characterization of the Specific DNA Nicking Activity of Restriction Endonuclease N.BstNBI,”Biol. Chem. 381:1123-1125, Nov. 2000.
Nadeau et al., “Real-Time, Sequence-Specific Detection of Nucleic Acids During Strand Displacement Amplification,”Anal. Biochem. 276:177-87, 1999.
Notomi et al., “Loop-Mediated Isothermal Amplification of DNA,”Nuc. Acids Res. 28(12):I-vii, 2000.
Nuovo, Gerard, “In Situ Strand Displacement Amplification: An Improved Technique for the Detection of Low Copy Nucleic Acids,”Diag. Mol. Path. 9(4):195-202, 2000.
N

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Methylation analysis using nicking agents does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Methylation analysis using nicking agents, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Methylation analysis using nicking agents will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-3435584

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.