Methods of quantitation and identification of peptides and...

Chemistry: analytical and immunological testing – Involving an insoluble carrier for immobilizing immunochemicals – Carrier is particulate and the particles are of...

Reexamination Certificate

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C435S007100, C435S174000, C435S175000, C435S176000, C435S177000, C435S973000, C435S287100, C435S287200, C436S518000, C436S528000, C436S529000, C436S530000, C436S531000, C436S532000, C436S533000, C436S535000, C436S175000, C436S177000, C427S002110, C427S002130, C427S533000, C427S554000

Reexamination Certificate

active

07846748

ABSTRACT:
The present invention provides methods of quantifying the amount or concentration of one or more peptides and/or proteins in one or more samples using differentially isotopically-labeled peptides and/or proteins. The invention also provides methods of identifying one or more peptides and/or proteins in one or more samples.

REFERENCES:
patent: 5670381 (1997-09-01), Jou et al.
patent: 5719060 (1998-02-01), Hutchens et al.
patent: 5894063 (1999-04-01), Hutchens et al.
patent: 6020208 (2000-02-01), Hutchens et al.
patent: 6027942 (2000-02-01), Hutchens et al.
patent: 6225047 (2001-05-01), Hutchens et al.
patent: 6379970 (2002-04-01), Liebler et al.
patent: 6391649 (2002-05-01), Chait et al.
patent: 6528320 (2003-03-01), Hutchens et al.
patent: 6579719 (2003-06-01), Hutchens et al.
patent: 6629040 (2003-09-01), Goodlett et al.
patent: 6670194 (2003-12-01), Aebersold et al.
patent: 6811969 (2004-11-01), Hutchens et al.
patent: 6881586 (2005-04-01), Hutchens et al.
patent: 6905879 (2005-06-01), Qiu et al.
patent: 6906338 (2005-06-01), Tajima
patent: 2002/0055186 (2002-05-01), Barry et al.
patent: 2002/0076817 (2002-06-01), Figeys et al.
patent: 2002/0090652 (2002-07-01), Fu et al.
patent: 2002/0182649 (2002-12-01), Weinberger et al.
patent: 2002/0192720 (2002-12-01), Parker et al.
patent: 2003/0044864 (2003-03-01), Short et al.
patent: 2003/0219731 (2003-11-01), Weinberger et al.
patent: 2004/0038307 (2004-02-01), Lee et al.
patent: 2004/0180380 (2004-09-01), Lee et al.
patent: 2005/0069911 (2005-03-01), Lee et al.
patent: 2504413 (2002-10-01), None
patent: A H08-329884 (1996-12-01), None
patent: A H09-061597 (1997-03-01), None
patent: A2003-501790 (2003-01-01), None
patent: WO 00/11208 (2000-03-01), None
patent: WO00/73750 (2000-12-01), None
patent: 02/25287 (2002-03-01), None
patent: WO 03/014302 (2003-02-01), None
patent: WO03/044221 (2003-05-01), None
patent: WO2009/103984 (2009-08-01), None
Hanke, T. et al. Immunogenicities of intravenous and intramuscular administrations of modified vaccinia virus Ankara-based multi-CTL epitope vaccine for human immunodeficiency virus type 1 in mice. J. Gen. Virol. 1998;79:83-90.
Legros, V. et al. Characterization of an anti-Borrelia burgdorferi OspA conformational epitope by limited proteolysis of monoclonal antibody-boudn antigen and mass spectrometric peptide mapping. Protein Sci. 2000;9:1002-1010.
Palker et al., “Type-specific neutralization of the human immunodeficiency virus with antibodies to env-encded synthetic peptides” Prol. Natl. Acad. Sci. USA, 1988, vol. 85, pp. 1932-1936.
Hochleitner, Elisabeth O., et al., “Characterization of a discontinuous epitope of the human immunodeficiency virus (HIV) core protein p24 by epitope excision and differential chemical modification followed by the mass spectrometric peptide mapping analysis”, Protein Science, vol. 9: 487-496, 2000.
Hochleitner, Elisabeth O., et al., “Mass Spectrometric Characterization of a Discontinuous Epitope of the HIV Envelope Protein HIV-gp120 Recognized by the Human Monoclonal Antibody 1331A”, The Journal of Immunology, vol. 164, No. 8: 4156-4161, 2000.
Parker, Carol E., et al., “Fine Definition of the Epitope of the gp41 Glycoprotein of Human Immunodeficiency Virus Type 1 for the Neutralizing Monoclonal Antibody 2F5”, Journal of Virology, vol. 75, No. 22: 10906-10911, Nov. 2001.
Raska, C.S., et al., “Direct MALDI-MS/MS of Peptides Bound to Affinity Media”, presented at the 50thAnnual Conference on Mass Spectrometry and Allied Topics, Orlando, FL, Jun. 2-6, 2002.
Raska, Christina S., et al., “Direct MALDI-MS/MS of Phosphopeptides Affinity-Bound to Immobilized Metal Ion Affinity Chromatography Beads”, Analytical Chemistry, vol. 74, No. 14: 3429-3433, Jul. 15, 2002.
Scrivener, Elaine, et al., “Peptidomics: A new approach to affinity protein microarrays”, Proteomics, vol. 3, No. 2: 122-128, Feb. 2003.
Sunnarborg, Susan Wohler, et al., “Tumor Necrosis Factor-α Coverting Enzyme (TACE) Regulates Epidermal Growth Factor Receptor Ligand Availablity”, The Journal of Biological Chemistry, vol. 277, No. 15: 12838-12845, Apr. 12, 2002.
Cretich et al., “Protein and peptide arrays: Recent trends and new directions,” Biomolecular Engineering, vol. 23, pp. 77-88 (2006).
Jiang et al., “An immunoaffinity tandem mass spectrometry (iMALDI) assay for detection of Francisella tularensis,” Analytica Chimica Acta, vol. 605, pp. 70-79 (2007).
Jiang et al., “Development of an immuno tandem mass spectrometry (iMAIDI) assay for EGFR diagnosis,” Proteomics Clin. Appl., vol. 1, pp. 1651-1659 (2007).
Krishnamurthy, “Rapid Identification of Bacteria by Direct Matrix-assisted Laser Desorption/Ionization Mass Spectrometric Analysis of Whole Cells,” Rapid Communications in Mass Spectrometry, vol. 10, 1992-1996 (1996).
Leenheer et al., “Applications of isotope dilution-mass spectrometry in clinical chemistry, pharmacokinetics, and toxicology,” Mass Spectrometry Reviews, vol. 11, pp. 249-307 (1992).
Mann et al., “Error-Tolerant Identification of Peptides in Sequence Databases by Peptide Sequence Tags,” Anal. Chern., vol. 66, pp. 4390-4399 (1994).
Mortz et al., “Sequence tag identification of intact proteins by matching tandem mass spectral data against sequence data bases,” Proc. Natl. Acad. Sci. USA, vol. 93, pp. 8264-8267 (Aug. 1996).
Oda et al., “Accurate quantitation of protein expression and site-specific phosphorylation,” Proc. Natl. Acad. Sci. USA, vol. 96, pp. 6591-6596 (Jun. 1999).
Sadygov et al., “Large-scale database searching using tandem mass spectra: Looking up the answer in the back of the book,” Nature Methods, vol. 1, No. 3, pp. 195-202 (Dec. 2004).
Shevchenko et al., “Linking genome and proteome by mass spectrometry: Large-scale identification of yeast proteins from two dimensional gels,” Proc. Natl. Acad. Sci. USA, vol. 93, pp. 14440-14445 (Dec. 1996).
Solassol et al., “Clinical proteomics and mass spectrometry profiling for cancer detection,” Expert Rev. Proteomics, vol. 3, No. 3, pp. 311-320 (2006).
Zhou et al., “Quantitative proteome analysis by solid-phase isotope tagging and mass spectrometry,” Nature Biotechnology, vol. 19, p. 512-515 (May 2002).
Gevaert et al., A peptide concentration and purification method for protein characterization in the subpicomole range using matrix assisted laser desorption/ionization-postsource decay (MALDI-PSD) sequencing.Electrophoresis. vol. 19 pp. 909-917 (1998).
Gevaert et al., Peptides adsorbed on reverse-phase chromatographic beads as targets for femtomole sequencing by post-source decay matrix assisted laser desorption ionization-reflectron time of flight mass spectrometry (MALDI-RETOF-MS).Electrophoresis. vol. 18 pp. 2950-2960 (1997).
Hurst et al., “Analysis for TNF-α using Solid-Phase Affinity Capture with Radiolabel and MALDI-MS Detection,” Anal. Chem., vol. 71, pp. 4727-4733 (1999).
Office Communication corresponding to Canadian Patent Application No. 2,507,864 dated Jul. 2, 2009.
Biemann K., “Contributions of mass spectrometry to peptide and protein structure,” Biomed. Environ. Mass Spectrom, vol. 16, No. 1-12, pp. 99-111 (1988).
Doucette et al., “Protein concentration and enzyme digestion on microbeads for MALDI-TOF peptides mass mapping of proteins from dilute solutions,” Anal. Chem., vol. 72, pp. 3355-3362 (Jul. 15, 2000).
Genbank Accession No. NP—000199.
Office Communication corresponding to Canadian Patent Application No. 2,507,864 dated Apr. 29, 2010.
Office Communication corresponding to Japanese Patent Application No. 2006/515045 dated Feb. 26, 2010.
Roepstorff P, Fohlman J: Proposal for a common nomenclature for sequence ions in mass spectra of peptides. Biomed Mass Spectrom 1984, 11(11):601.
S. P. Gygi et al., “Quantitative analysis of complex protein mixtures using isotope-coded affinity ta

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