Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid
Reexamination Certificate
2006-12-26
2010-12-14
Riley, Jezia (Department: 1637)
Chemistry: molecular biology and microbiology
Measuring or testing process involving enzymes or...
Involving nucleic acid
C435S005000, C536S023100, C536S024300, C536S024330, C536S025300, C536S026600
Reexamination Certificate
active
07851155
ABSTRACT:
This invention pertains to the field of combination oligomers, including the block synthesis of combination oligomers in the absence of a template, as well as related methods, kits, libraries and other compositions.
REFERENCES:
patent: 4683202 (1987-07-01), Mullis
patent: 5188934 (1993-02-01), Menchen et al.
patent: 5252293 (1993-10-01), Drbal et al.
patent: 5366860 (1994-11-01), Bergot et al.
patent: 5527675 (1996-06-01), Coull et al.
patent: 5539082 (1996-07-01), Nielsen et al.
patent: 5539083 (1996-07-01), Cook et al.
patent: 5612458 (1997-03-01), Hyldig-Nielsen et al.
patent: 5623049 (1997-04-01), L{hacek over (s)}bberding et al.
patent: 5700922 (1997-12-01), Cook et al.
patent: 5714331 (1998-02-01), Buchardt et al.
patent: 5736336 (1998-04-01), Buchardt et al.
patent: 5766855 (1998-06-01), Buchardt et al.
patent: 5786461 (1998-07-01), Buchardt et al.
patent: 5817811 (1998-10-01), Breipohl et al.
patent: 5831014 (1998-11-01), Cook et al.
patent: 5837459 (1998-11-01), Berg et al.
patent: 5847162 (1998-12-01), Lee et al.
patent: 5864010 (1999-01-01), Cook et al.
patent: 5891625 (1999-04-01), Buchardt et al.
patent: 5936087 (1999-08-01), Benson et al.
patent: 5972610 (1999-10-01), Buchardt et al.
patent: 5986053 (1999-11-01), Ecker et al.
patent: 6008379 (1999-12-01), Benson et al.
patent: 6020132 (2000-02-01), Orun et al.
patent: 6020481 (2000-02-01), Benson et al.
patent: 6051719 (2000-04-01), Benson et al.
patent: 6063569 (2000-05-01), Gildea et al.
patent: 6080868 (2000-06-01), Lee et al.
patent: 6107470 (2000-08-01), Nielsen et al.
patent: 6110676 (2000-08-01), Coull et al.
patent: 6140500 (2000-10-01), Yan et al.
patent: 6191278 (2001-02-01), Lee et al.
patent: 6248884 (2001-06-01), Lam et al.
patent: 6280964 (2001-08-01), Kavanaugh et al.
patent: 6287772 (2001-09-01), Stefano et al.
patent: 6297016 (2001-10-01), Egholm et al.
patent: 6326468 (2001-12-01), Canne et al.
patent: 6326479 (2001-12-01), Gildea et al.
patent: 6433134 (2002-08-01), Patron et al.
patent: 6469151 (2002-10-01), Egholm et al.
patent: 6756199 (2004-06-01), Cook et al.
patent: 7256275 (2007-08-01), Coull et al.
patent: 7674585 (2010-03-01), Coull et al.
patent: 2003/0082558 (2003-05-01), Egholm et al.
patent: 2002250262 (2007-08-01), None
patent: 3943522 (1991-02-01), None
patent: 237362 (1987-03-01), None
patent: 0733206 (1998-04-01), None
patent: 0857791 (1998-08-01), None
patent: 0897991 (1999-02-01), None
patent: 1 412 517 (2006-11-01), None
patent: WO9220702 (1992-11-01), None
patent: WO9220703 (1992-11-01), None
patent: WO9514706 (1995-06-01), None
patent: WO9602558 (1996-02-01), None
patent: WO9604000 (1996-02-01), None
patent: WO9640709 (1996-12-01), None
patent: WO9745539 (1997-12-01), None
patent: WO9921881 (1999-05-01), None
patent: WO9922018 (1999-05-01), None
patent: WO9937670 (1999-07-01), None
patent: WO9941273 (1999-08-01), None
patent: WO9949293 (1999-09-01), None
patent: WO9955916 (1999-11-01), None
patent: WO0131063 (2001-05-01), None
Buhler, C. et al, Template switching between PNA and RNA oligonucleotides. Nature, 376, 578-581, (1995).
Boston Probes press release, Bedford, MA Jun. 25, 2001.
Corey, David, Peptide nucleic acids: expanding the scope of nucleic acid recognition. Tibtech, 15, 224-229, (1997).
Dunn, J. et al., Ligation of Hexamers on Hexamer Templates to Produce Primers for Cycle Sequencing or the Polymerase Chain Reaction. Analytical Biochemistry, 228, 91-100, (1995).
Far?se, A. et al, Liquid Phase Synthesis of a Peptide Nucleic Acid Dimer. Tetrahedron Letters, 9, 1413-1416, (1996).
Fiandaca, M. et al, Pna Blocker Probes Enhance Specificity in Probe Assays. Peptide Nucleic Acids, 3.4, 129-141, (1999).
Gildea, B. et al, PNA Solubility Enhancers. Tetrahedron Letters, 39, 7255-7258, (1998).
Guo, Z. et al, Enhanced discrimination of a single nucleotide polymorphisms by artificial mismatch hybridization, Nature Biotechnology, 15, 331-335, (1997).
Kaczorowski, T. et al, Assembly of 18-Nucleotide Primers by Ligation of Three Hexamers: Sequencing of Large Genomes by Primer Walking. Analytical Biochemistry, 221, 127-135, (1994).
Koppitz, M. et al, Formation of Oligonucleotide-PNA-Chimeras by Template-Directed Ligation. J. Am. Chem. Soc., 120, 4563-4569, (1998).
Kotler, L. et al, DNA Squencing: Modular primers assembled from a library of hexamers or pentamers. Proc. Natl. Acad. Sci. USA, 90, 4241-4245, (1993).
Kotler, L. et al, DNA Sequencing: Modular Primers for Automated Walking. BioTechniques, 3, 554-558, (1994).
Kumar, V. et al, Pyrrolidine Nucleic Acids: DNA/PNA Oligomers with 2-Hydroxy/Aminomethy1-4-(thymin-1-yl)pyrrolidine-N-acetic acid. Organic Letters, 9, 1269-1272, (2001).
Lu, W. et al, Comparative Total Syntheses of Turkey Ovomucoid Third Domain by Both Stepwise Solid Phase Peptide Syntheses and Native Chemical Ligation. J. Am. Chem. Soc., 118, 8518-8523, (1996).
Lutz, M. et al, Recognition of Uncharged Polyamide-Linked Nucleic Acid Analogs by DNA Polymerases and Reverse Transcriptases. J. Am.Chem. Soc., 119, 3177-3178, (1997).
Mattes, A. et al, Sequence fidelity of a template-directed PNA-ligation reaction. Chem. Commun., 2050-2051, (2001).
Muir, T. et al, Protein Synthesis by Chemical Ligation of Unprotected Peptides In Aqueous Solution. Methods In Enzymology, 289, 266-298, (1997).
Nielsen, P. et al, Peptide Nucleic Acid. A Molecule with Two Identities. Accounts of Chemical Research, 7, 624-630, (1999).
Nielsen, P. et al, peptide Nucleic Acids: A New Dimension to Peptide Libraries and Aptamers. Methods In Enzymology, 267, 426-433, (1996).
Nilsson, P. et al, Quantitative Investigation of the Modular Primer Effect for DNA and Peptide Nucleic Hexamers. Analytical Biochemistry, 269, 155-161, (1999).
PerSeptive Biosystems 1997-1998 Synthesis Products Catalog. p. 45.
PerSeptive Biosystems Promotional Literature. Bio ConSepts. vol. 4, No. 3. Publication #NL612 (1996).
PerSeptive Biosystems Promotional Literature. Practical PNA. vol. 1, Iss. 2. PNA Oligomers as hybridization probes. Publication #PN003 (1995).
PerSeptive Biosystems Promotional Literature. Practical PNA, Review. Peptide Nucleic Acids (PNA): Expanding the role of synthetic DNA analogs. Publication #PN001 (1995).
Roll, C., et al, Conformations of Nicked and Gapped DNA Structures by NMR and Molecular Dynamic Simulations In Water. Biochemistry, 37, 4059-4070, (1998).
Schmidt, J. et al, Enantiomeric Cross-Inhibition In the Synthesis of Oligonucleotides on a Nonchiral Template. J. Am. Chem. Soc., 119, 1494-1495, (1997).
Schmidt, J. et al, Information transfer from DNA to peptide nucleic acids by template-directed syntheses. Nucleic Acids Research, 23, 4792-4796, (1997).
Schmidt, J. et al, Information transfer from peptide nucleic acids to RNA by template-directed syntheses. Nucleic Acids Research, 23, 4797-4802, (1997).
Seela, F. et al, The N8-(2′-deoxyribofuranoside) of 8-aza-7-deazaadenine: a universal nucleoside forming specific hydrogen bonds with the four canonical DNA constituents. Nucleic Acids Research, 17, 3224-3232, (2000).
Xu, Y. et al, Nonenzymatic autoligation In direct three-color detection of RNA and DNA point mutations Nature Biotechnology, 19, 148-152, (2001).
Altmann, K., et al, Polyamide Based Nucleic Acid Analogs- Synthesis of ?-Amino Acids with Nucleic Acid Bases Bearing Side Chains. Bioorganic & Medicinal Chemistry Letters, 9, 1119-1122, (1997).
Cantin, M. et al, Synthesis of the Monomeric Building Blocks of Z-Olefinic PNA (Z-OPA) Containing the Bases Adenine and Thymine. Tett. Letters, 24, 4211-4214 (1997).
Ciapetti, P. et al, Synthesis of N-Fmoc-α-AMino Acids Carrying the Four DNA Nucleobases In the Side Chain. Tetrahedron, 53, 1167-1176 (1997).
Diederichsen, Ulf, Alanyl-PNA Homoduplex: A-T Pairing With The N7-Regiosomer Of Adenine. Bioorganic & Medicianal Chemistry Letters, 8, 165-168, (1998).
Diederichse, Ulf, Alanyl-PNA Oligomers: A New System for Intercalation. Bioorganic & Medicinal Chemistry Letters, 7, 1743-1746 (1997).
Diederichse, U. et al, ?-Homoalanyl PNAs:Synthesis and Indication of Higher Ordered Structures. Angew. Chem Int. Ed, 3, 302-305, (1998).
Coull James M.
Creasey Theresa S.
Fiandaca Mark J.
Hyldig-Nielsen Jens J.
Kristjanson Mark D.
Boston Probes, Inc.
Riley Jezia
LandOfFree
Methods, kits and compositions pertaining to combination... does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with Methods, kits and compositions pertaining to combination..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Methods, kits and compositions pertaining to combination... will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-4185508