Methods for the synthesis of arrays of DNA probes

Organic compounds -- part of the class 532-570 series – Organic compounds – Carbohydrates or derivatives

Reexamination Certificate

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C435S006120, C435S283100, C435S288700, C422S068100, C422S082050, C359S298000

Reexamination Certificate

active

08030477

ABSTRACT:
The synthesis of arrays of DNA probes sequences, polypeptides, and the like is carried out using a patterning process on an active surface of a substrate. An image is projected onto the active surface of the substrate utilizing reflective projection optics. The projection optics project a light image onto the active surface of the substrate to deprotect linker molecules thereon. A first level of bases may then be applied to the substrate, followed by development steps, and subsequent exposure of the substrate utilizing a different light image, with further repeats until the elements of a two dimensional array on the substrate surface have an appropriate base bound thereto.

REFERENCES:
patent: 4146329 (1979-03-01), King et al.
patent: 4163150 (1979-07-01), Stankewitz
patent: 4301363 (1981-11-01), Suzuki et al.
patent: 4571603 (1986-02-01), Hornbeck et al.
patent: 4596992 (1986-06-01), Hornbeck
patent: 4615595 (1986-10-01), Hornbeck
patent: 4662746 (1987-05-01), Hornbeck
patent: 5028939 (1991-07-01), Hornbeck et al.
patent: 5083857 (1992-01-01), Hornbeck
patent: 5096279 (1992-03-01), Hornbeck et al.
patent: 5143854 (1992-09-01), Pirrung et al.
patent: 5149172 (1992-09-01), Davis
patent: 5159172 (1992-10-01), Goodman et al.
patent: 5202231 (1993-04-01), Drmanac et al.
patent: 5252743 (1993-10-01), Barrett et al.
patent: 5318679 (1994-06-01), Nishioka
patent: 5324483 (1994-06-01), Cody et al.
patent: 5405783 (1995-04-01), Pirrung et al.
patent: 5412087 (1995-05-01), McGall et al.
patent: 5424186 (1995-06-01), Fodor et al.
patent: 5445934 (1995-08-01), Fodor et al.
patent: 5451683 (1995-09-01), Barrett et al.
patent: 5482867 (1996-01-01), Barrett et al.
patent: 5489678 (1996-02-01), Fodor et al.
patent: 5504614 (1996-04-01), Webb et al.
patent: 5510270 (1996-04-01), Fodor et al.
patent: 5535047 (1996-07-01), Hornbeck
patent: 5556752 (1996-09-01), Lockhart et al.
patent: 5578832 (1996-11-01), Trulson et al.
patent: 5583688 (1996-12-01), Hornbeck
patent: 5593839 (1997-01-01), Hubbell et al.
patent: 5599695 (1997-02-01), Pease et al.
patent: 5600383 (1997-02-01), Hornbeck
patent: 5604624 (1997-02-01), Magarill
patent: 5631734 (1997-05-01), Stern et al.
patent: 5653939 (1997-08-01), Hollis et al.
patent: 5677195 (1997-10-01), Winkler et al.
patent: 5691541 (1997-11-01), Ceglio et al.
patent: 5695940 (1997-12-01), Drmanac et al.
patent: 5696631 (1997-12-01), Hoffman
patent: 5734498 (1998-03-01), Krasieva et al.
patent: 5744101 (1998-04-01), Fodor et al.
patent: 5744305 (1998-04-01), Fodor et al.
patent: 5753788 (1998-05-01), Fodor et al.
patent: 5768009 (1998-06-01), Little
patent: 5815310 (1998-09-01), Williamson
patent: 5831070 (1998-11-01), Pease et al.
patent: 5870176 (1999-02-01), Sweatt et al.
patent: 5959098 (1999-09-01), Goldberg et al.
patent: 6060224 (2000-05-01), Sweatt et al.
patent: 6225625 (2001-05-01), Pirrung et al.
patent: 6271957 (2001-08-01), Quate et al.
patent: 6295153 (2001-09-01), Garner
patent: 6375903 (2002-04-01), Cerrina et al.
patent: 6426184 (2002-07-01), Gao et al.
patent: 0 961 174 (1999-12-01), None
patent: 08-55793 (1996-02-01), None
patent: 09-312255 (1997-12-01), None
patent: WO 90/15070 (1990-12-01), None
patent: WO 93/22678 (1993-11-01), None
patent: WO 99/41007 (1999-08-01), None
patent: WO 99/63385 (1999-12-01), None
Gao et al U.S. Appl. No. 60/074,368, filed Feb. 11, 1998.
Offner, A., “New Concepts in Projection Mask Aligners,” Optical Engineering, vol. 14, pp. 130-132, 1975.
Kerth, R.T., et al., “Excimer Laser Projection Lithography on a Full-Field Scanning Projection System,” IEEE Electron Device Letters, vol. EDL-7(5), pp. 299-301, 1986.
Goodall, F.N., et al., “Excimer Laser Photolithography with 1:1 Wynne-Dyson Optics,” SPIE vol. 922, Optical/Laser Microlithography, 1988.
Ruff, B., et al., “Broadband Deep-UV High NA Photolithography System,” SPIE vol. 1088, Optical/Laser Microlithography II, 1989.
Neff, J.A., et al., “Two-Dimensional Spatial Light Modulators: A Tutorial,” Proceedings of the IEEE, vol. 78, No. 5, pp. 826-855, May 1990.
Pease, et al., “Light-Generated Oligonucleotide Arrays for Rapid DNA Sequence Analysis,” Proc. Nat'l. Acad. Sci. USA, vol. 91, pp. 5022-5026, May 1994.
Hornbeck, L.J., “Digital Light Processing and MEMs: Reflecting the Digital Display Needs of the Networked Society,” SPIE/EOS European Symposium on Lasers, Optics, and Vision for Productivity and Manufacturing I, Besancon, France, Jun. 10-14, 1996.
McGall, G.H., et al., “Light-Directed Synthesis of High-Density Oligonucleotide Arrays Using Semiconductor Photoresists,” Proc. Nat'l Acad. Sci. USA, vol. 93, pp. 13555-13560, Nov. 1996.
McGall, G.H., et al., “The Efficiency of Light-Directed Synthesis of DNA Arrays on Glass Substrates,” Journal of the American Chemical Society, vol. 119, No. 22, pp. 5081-5090, 197.
“Digital Optical Chemistry,” Online! XP002308688 www. Archive.org, retrieved from the Internet: URL:http://web.archive.org/web/19981202230253/http://pompous.swmed.edu/doc.htm, Dec. 2, 1998.
“The Digital Optical Chemistry System,” found at http://innovation.swmed.edu/research/bioeng/res—bio—doc.html, printed Feb. 15, 2006.
U.S. Appl. No. 09/639,602, filed Aug. 15, 2000, Cerrina et al.
Office Action received in Japanese Patent Application No. 2000-532704, Dec. 22, 2008.
English Translation of Japanese Final Office Action in Japanese Patent Application No. 2000-532704, Nov. 5, 2009.
Final Office Action received in Japanese Patent Application No. 2000-532704, Aug. 26, 2010.
Official Decision of grant for patent in Japanese Patent Application No. 2000-532704, Feb. 10, 2011.
Paufler et al., High-throughput optical direct write lithography, Solid State Technology, Jun. 1997,pp. 175,176,178,180,182.
Wallraff et al., DNA sequencing on a chip, Chemtech, Feb. 1997, pp. 22-32.
Brunner , Impact of lens aberrations on optical lithography, J. RES. DEVELOP., Jan./Mar. 1997, pp. 57-67, vol. 41, No. 112.
Examination Communication from the European Patent Office for EP Application No. 99 908 351.2, Oct. 31, 2007.
Examination Communication from the European Patent Office for EP Application No. 99 908 351.2, Jul. 3, 2008.
Decision to Grant a European Patent from the European Patent Office for EP Application No. 99 908 351.2, Mar. 25, 2010.
Final Office Action received in U.S. Appl. No. 09/639,602, Sep. 17, 2009.
Non-Final Office Action received in U.S. Appl. No. 09/639,602, Mar. 5, 2009.
Non-Final Office Action received in U.S. Appl. No. 09/639,602, Jun. 3, 2008.
Non-Final Office Action received in U.S. Appl. No. 09/639,602, Sep. 11, 2007.
Final Office Action received in U.S. Appl. No. 09/639,602, Nov. 29, 2006.
Non-Final Office Action received in U.S. Appl. No. 09/639,602, Feb. 28, 2006.
Final Office Action received in U.S. Appl. No. 09/639,602, Jun. 30, 2004.
Non-Final Office Action received in U.S. Appl. No. 09/639,602, Jan. 16, 2004.
Non-Final Office Action received in U.S. Appl. No. 09/639,602, Aug. 13, 2003.
Pre-Brief Appeal Conference Request in U.S. Appl. No. 09/639,602, Dec. 16, 2009.
Pre-Brief Appeal Conference Decision in U.S. Appl. No. 09/639,602, Jan. 27, 2010.
Appeal Brief in U.S. Appl. No. 09/639,602, Mar. 26, 2010.
Examiners Answer to Appeal Brief in U.S. Appl. No. 09/639,602, Aug. 4, 2010.
Reply Brief in U.S. Appl. No. 09/639,602, Oct. 4, 2010.
Non-Final Office Action received in 6,375,903, Mar. 21, 2000.
Non-Final Office Action received in 6,375,903, Jun. 18, 2001.
Non-Final Office Action received in Patent Application No. 09/637,891, Jul. 1, 2003.
Non-Final Office Action received in Patent Application No. 09/637,891, Jul. 14, 2005.
Judgment Request for Adverse-Bd.R. 127(b) RE: Interference for U.S. Patent No. 6,375,903, Nov. 27, 2007.
Decision -Rehearing-Bd.R. 125(c) RE: Interference for U.S. Patent No. 6,375,903, Nov. 8, 2007.
Cerrina Miscellaneous Motion 1 (for Rehearing) RE: Interference for U.S. Patent No. 6,375,903, Nov. 6, 2007.
Decision-Interlocutory Motions-Bd.R. 125(b) RE: Interference

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