Methods for synthesis of encoded libraries

Combinatorial chemistry technology: method – library – apparatus – Method of creating a library – Solid-phase synthesis or particular method of cleavage from...

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C506S007000, C506S013000, C506S023000, C506S025000, C506S030000, C435S006120, C435S091200, C536S023100, C530S300000, C530S350000

Reexamination Certificate

active

07972994

ABSTRACT:
The present invention provides methods of synthesizing libraries of molecules comprising a functional moiety which is operatively linked to an encoding oligonucleotide, wherein the encoding oligonucleotide comprises a capping sequence containing degenerate nucleotides. The methods generally include providing a solution comprising initiator compounds comprising an initial functional moiety comprising n building blocks which is operatively linked to an initial oligonucleotide; dividing the solution into reaction vessels; reacting the initiator compounds in each reaction vessel with a building block comprising a complementary reactive group to form a covalent bond; and reacting the initial oligonucleotide in each aliquot with a distinct incoming oligonucleotide in the presence of an enzyme which catalyzes the ligation of the incoming oligonucleotide and the initial oligonucleotide, under conditions suitable for enzymatic ligation of the incoming oligonucleotide and the initial oligonucleotide to form an encoding oligonucleotide.

REFERENCES:
patent: 5573905 (1996-11-01), Lerner et al.
patent: 5708153 (1998-01-01), Dower et al.
patent: 5723598 (1998-03-01), Lerner et al.
patent: 6060596 (2000-05-01), Lerner et al.
patent: 6537776 (2003-03-01), Short
patent: 2005/0158765 (2005-07-01), Morgan et al.
patent: WO-91/05058 (1991-04-01), None
patent: WO-92/02536 (1992-02-01), None
patent: WO-93/06121 (1993-04-01), None
patent: WO-93/20242 (1993-10-01), None
patent: WO-94/13623 (1994-06-01), None
patent: WO-00/23458 (2000-04-01), None
patent: WO-02/074929 (2002-09-01), None
patent: WO-02/102820 (2002-12-01), None
patent: WO-02/103008 (2002-12-01), None
patent: WO-03/078050 (2003-09-01), None
patent: WO-03/078445 (2003-09-01), None
patent: WO-03/078446 (2003-09-01), None
patent: WO-03/078625 (2003-09-01), None
patent: WO-03/078625 (2003-09-01), None
patent: WO-03/078626 (2003-09-01), None
patent: WO-03/078627 (2003-09-01), None
patent: WO-03/101972 (2003-12-01), None
patent: WO-04/001042 (2003-12-01), None
patent: WO-2004/009814 (2004-01-01), None
patent: WO-2004/013070 (2004-02-01), None
patent: WO-2004/013070 (2004-02-01), None
patent: WO-2004/016767 (2004-02-01), None
patent: WO-2004/074429 (2004-02-01), None
patent: WO-2004/074429 (2004-02-01), None
patent: WO-2004/024929 (2004-03-01), None
patent: WO-2004/039825 (2004-05-01), None
patent: WO-2004/056994 (2004-07-01), None
patent: WO-2004/074501 (2004-09-01), None
patent: WO-2004/083427 (2004-09-01), None
patent: WO-2004/099441 (2004-11-01), None
patent: WO-2004/110964 (2004-12-01), None
patent: WO-2005/003778 (2005-01-01), None
patent: WO-2005/026387 (2005-03-01), None
patent: WO-2005/058479 (2005-06-01), None
patent: WO-2005/078122 (2005-08-01), None
patent: WO-2005/090566 (2005-09-01), None
patent: WO-2006/053571 (2006-05-01), None
Ansoy, K., et al. “Some reactions of 2,4,6-trichloro-s-triazine.”Journal of Qafqaz University. 1997; 1:131-7.
Brenner, Sydney et al., “Encoded combinatorial chemistry,” Proc. Natl. Acad. Sci. USA, vol. 89:5381-5383 (1992).
Calderone, Christopher T. et al., “Directing Otherwise Incompatible Reactions in a Single Solution by Using DNA-Templated Organic Synthesis,”Angew. Chem. Int. Ed., vol. 41(21):4104-4108 (2002).
Calderone, Christopher T. et al., “Nucleic-acid-templated synthesis as a model system for ancient translation,”Current Opinion in Chemical Biology, vol. 8:645-653 (2004).
Czlapinski, Jennifer L. et al., “Nucleic Acid Template-Directed Assembly of Metallosalen-DNA Conjugates,”J. Am. Chem. Soc., vol. 123:8618-8619 (2001).
Gartner, Zev J. et al., “DNA-Templated Organic Synthesis and Selection of a Library of Macrocycles,”Science, vol. 305:1601-1605 (2004).
Gryaznov, Sergei M. et al., “Chemical Ligation of Oligonucleotides in the Presence and Absence of a Template,”J. Am. Chem. Soc., vol. 115:3808-3809 (1993).
Halpin, D., et al. “DNA display I. Sequence-encoded routing of DNA populations.”PLoS Biology. 2004; 2(7):1015-21.
Halpin, D., et al. “DNA display II Genetic manipulation of combinatorial chemitry libraries for small-molecule evolution.”PLoS Biology. 2004; 2(7):1022-30.
Halpin, D., et al. “DNA display III. Solid-phase organic synthesis on unprotected DNA.”PloS Biology. 2004; 2(7):1031-8.
Kanan, Matthew W. et al., “Reaction discovery enabled by DNA-templated synthesis and in vitro selection,”Nature, vol. 431:545-549 (2004).
Kinoshita, Y., et al. “Enzymatic synthesis of code regions for encoded combinatorial chemistry (ECC).”Nucleic Acids Symp Ser. 1995; (34):201-2.
Li, Xiaoyu et al., “Translation of DNA into SyntheticN-Acyloxazolidines,”J. Am. Chem. Soc., vol. 126:5090-5092 (2004).
Needels, M., et al. “Generation and screening of an oligonucleotide-encoded synthetic peptide library.”Proc Natl Acad Sci USA. Nov. 15, 1993; 90(22):10700-4.
Nielsen, John et al., “Synthetic Methods for the Implementation of Encoded Combinatorial Chemistry,”J. Am. Chem. Soc., vol. 115(21):9812-9813 (1993).
Nielsen, John et al., “Toward Chemical Implementation of Encoded Combinatorial Libraries,”Methods: A Comparison to Methods in Enzymology, vol. 6:361-371 (1994).
International Search Report for Application No. PCT/US2006/041356, dated Aug. 21, 2007.
International Search Report for Application No. PCT/US2006/022555, dated Mar. 23, 2007.
International Search Report for Application No. PCT/US2004/042964, dated Aug. 16, 2005.
International Preliminary Report on Patentability for Application No. PCT/US2006/022555, dated Dec. 11, 2007.

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Methods for synthesis of encoded libraries does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Methods for synthesis of encoded libraries, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Methods for synthesis of encoded libraries will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-2707455

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.