Methods for genotyping selected polymorphism

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C435S091200, C536S023100, C536S024300, C536S025300

Reexamination Certificate

active

07459273

ABSTRACT:
Methods for genotyping polymorphisms using a locus specific primer that is complementary to a region near a selected polymorphism are described. Methods for synthesizing pools of locus specific primers that incorporate some degenerate positions are also disclosed. A plurality of different sequence capture probes are synthesized simultaneously using degenerate oligonucleotide synthesis. The sequence of the locus specific regions of the capture probes are related in that they have some bases that are identical in each sequence in the plurality of sequences and positions that vary from one locus specific region to another. The sequences are selected based on proximity to a polymorphism of interest and because they conform to a similar sequence pattern.

REFERENCES:
patent: 5002867 (1991-03-01), Macevicz
patent: 5143854 (1992-09-01), Pirrung et al.
patent: 5202231 (1993-04-01), Drmanac et al.
patent: 5387505 (1995-02-01), Wu
patent: 5492806 (1996-02-01), Drmanac et al.
patent: 5498535 (1996-03-01), Fomenkov et al.
patent: 5501964 (1996-03-01), Wigler et al.
patent: 5508169 (1996-04-01), Deugau et al.
patent: 5580730 (1996-12-01), Okamoto
patent: 5582989 (1996-12-01), Caskey et al.
patent: 5624825 (1997-04-01), Walker et al.
patent: 5667972 (1997-09-01), Drmanac et al.
patent: 5695940 (1997-12-01), Drmanac et al.
patent: 5700637 (1997-12-01), Southern
patent: 5700642 (1997-12-01), Monforte et al.
patent: 5710000 (1998-01-01), Sapolsky et al.
patent: 5776753 (1998-07-01), Hillman et al.
patent: 5854033 (1998-12-01), Lizardi
patent: 5858656 (1999-01-01), Deugau et al.
patent: 5858671 (1999-01-01), Jones
patent: 5972693 (1999-10-01), Rothberg et al.
patent: 5994068 (1999-11-01), Guilfoyle et al.
patent: 6045994 (2000-04-01), Zabeau et al.
patent: 6057096 (2000-05-01), Rothschild et al.
patent: 6100030 (2000-08-01), McCasky Feazel et al.
patent: 6103463 (2000-08-01), Chetverin et al.
patent: 6197510 (2001-03-01), Vinayagamoorthy
patent: 6232066 (2001-05-01), Felder et al.
patent: 6248877 (2001-06-01), Bonner et al.
patent: 6258539 (2001-07-01), Hunkapiller et al.
patent: 6280935 (2001-08-01), Macevicz
patent: 6280950 (2001-08-01), Lipshutz et al.
patent: 6322971 (2001-11-01), Chetverin et al.
patent: 6352828 (2002-03-01), Brenner
patent: 6355431 (2002-03-01), Chee et al.
patent: 6361947 (2002-03-01), Dong et al.
patent: 6509160 (2003-01-01), Sapolsky et al.
patent: 6521428 (2003-02-01), Senapathy
patent: 6703228 (2004-03-01), Landers et al.
patent: 6720179 (2004-04-01), Macevicz
patent: 6773886 (2004-08-01), Kaufman et al.
patent: 6777187 (2004-08-01), Makarov et al.
patent: 6812005 (2004-11-01), Fan et al.
patent: 7108976 (2006-09-01), Jones et al.
patent: 7297778 (2007-11-01), Matsuzaki et al.
patent: 2003/0036069 (2003-02-01), Su
patent: 2004/0067493 (2004-04-01), Matsuzaki et al.
patent: 2004/0110153 (2004-06-01), Dong et al.
patent: 2005/0100911 (2005-05-01), Patil et al.
patent: 2005/0148004 (2005-07-01), Wober et al.
patent: 2006/0063158 (2006-03-01), Dong et al.
patent: 2006/0073501 (2006-04-01), Van Den Boom et al.
patent: 2006/0246457 (2006-11-01), Dirks et al.
patent: 2007/0065816 (2007-03-01), Dong et al.
patent: 0534858 (1993-03-01), None
patent: 1350853 (2003-10-01), None
patent: WO 96/41893 (1996-12-01), None
patent: WO 01/88174 (2001-11-01), None
Broude et al., High Level Muliplex DNA Amplification;Antisense & Nucleic Acid Drug Development, 2001, 11: 327-332.
Broude et al., Multiplex Allele-Specific Target Amplification Based on PCR Suppression,PNA, Jan. 2, 2001, 98:1, 206-211.
Craig et al., Removal of Repetitive Sequences from FISH probes using PCR-assisted affinity chomatography; Human Genetics, vol. 100, No. 3-4, 1997, pp. 471-476.
Durm et al., Fast-painting of Human Methaphase Spreads Using a Chromosome-Specific, Repeat-Depleted DNA Library Probe; Biotechniques, Eaton Publishing; vol. 24; No. 5; May 1988; pp. 820-825.
Siebert et al., An Improved PCR Method for Walking an Uncloned Genomic DNA,Nucelic Acids Research, 1995, 23:6, 1087-1088.

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Methods for genotyping selected polymorphism does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Methods for genotyping selected polymorphism, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Methods for genotyping selected polymorphism will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-4024433

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.