Data processing: measuring – calibrating – or testing – Measurement system in a specific environment – Biological or biochemical
Reexamination Certificate
2007-10-02
2007-10-02
Shukla, Ram R. (Department: 1631)
Data processing: measuring, calibrating, or testing
Measurement system in a specific environment
Biological or biochemical
C435S004000, C435S006120, C702S027000, C703S011000
Reexamination Certificate
active
09739525
ABSTRACT:
The present invention provides methods for extracting similar expression patterns and related biopolymers considering natures that are characteristic of expression data of, for example, genes. A segment of experiment cases which includes an expression of interest is selected as a search range among an expression pattern of a reference gene or the like. By comparing the selected segment of the expression pattern with expression patterns of a group of candidate genes or the like, genes having an expression pattern with at least a partial similarity are searched from the group of candidate genes. A partially taken out curve (a part of an, expression pattern) is transferred to overlap an expression pattern curve of a candidate gene to search expression patterns with a similar pattern shape.
REFERENCES:
patent: 4852183 (1989-07-01), Abe et al.
patent: 5732394 (1998-03-01), Nakadai et al.
patent: 6069701 (2000-05-01), Hashimoto et al.
patent: 6692916 (2004-02-01), Bevilacqua et al.
patent: 1 037 158 (2000-09-01), None
patent: 9068994 (1996-03-01), None
patent: 10-160419 (1996-12-01), None
patent: WO 00/24936 (2000-05-01), None
Michaels et al. “Cluster Analysis and Data Visualization of Large-Scale Gene Expression Data” Pacific Symposium on Biocomputing (1998) vol. 3, pp. 42-53.
Shimomura et al. “Differential Expression of Exons 1a and 1c in mRNAs for Sterol Regulatory Element Binding Protein-1 in Human and Mouse organs and Cultured Cells” J. Clin. Invest. (1997) vol. 99, pp. 838-845.
Tamayo, P. et al., “Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation,” Proc. Natl. Acad. Sci. USA, vol. 96 (1999).
Ewing, R.M., et al., “Large-Scale Statistical Analyses of Rice ESTs Reveal Correlated Patterns of Gene Expression,” Genome Research, vol. 9 (1999) pp. 950-959.
van Steensel, M. AM. et al., “Probing the Gene expression Database for candidate genes,” European Journal of Human Genetics, vol. 7 (1999). pp. 910-919.
Alon, U. et al., “Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays, ” Proc. Natl. Acad. Sci. USA, vol. 96, (1999) pp. 6745-6750.
Heyer, L.J. et al., “Exploring Expression Data: Identification and Analysis of Coexpressed Genes,” Genome Research, Cold Spring Harbor Laboratory Press, US, vol. 9, No. 11, (1999) pp. 1106-1115.
Eisen, M. B. et al., “Cluster analysis and display of genome-wide expression patterns,” Proc. Natl. Acad. Sci, USA, vol. 95 (1998) pp. 14863-14868.
“Estimation of Gene Functions”, Experimental Medicine (Sep. 1990), vol. 17, No. 13, pp. 1670-1673, and 1692, (English abstract only).
Nakashige Ryo
Nozaki Yasuyuki
Tamura Takuro
Watanabe Tsunehiko
A. Marquez, Esq. Juan Carlos
DeJong Eric S
Fisher Esq. Stanley P.
Hitachi Software Engineering Co. Ltd.
Reed Smith LLP
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