Methods for detection and identification of...

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C435S091200, C536S023700, C536S024320, C536S024330

Reexamination Certificate

active

07449289

ABSTRACT:
The present invention describes novel SCCmec right extremity junction sequences for the detection of methicillin-resistantStaphyloccocus aureus(MRSA). It relates to the use of these DNA sequences for diagnostic purposes.

REFERENCES:
patent: 4683195 (1987-07-01), Mullis et al.
patent: 4683202 (1987-07-01), Mullis
patent: 5437978 (1995-08-01), Ubukata et al.
patent: 5496706 (1996-03-01), Kuusela et al.
patent: 5702895 (1997-12-01), Matsunaga et al.
patent: 5776712 (1998-07-01), Kuusela et al.
patent: 5780610 (1998-07-01), Collins et al.
patent: 5866366 (1999-02-01), Kallender
patent: 6090592 (2000-07-01), Adams et al.
patent: 6117635 (2000-09-01), Nazarenko et al.
patent: 6117986 (2000-09-01), Nardone et al.
patent: 6156507 (2000-12-01), Hiramatsu et al.
patent: 2006/0252078 (2006-11-01), Huletsky et al.
patent: 0 527 628 (1993-02-01), None
patent: 0 887 424 (1998-12-01), None
patent: 11056371 (1999-03-01), None
patent: WO 92/02638 (1991-08-01), None
patent: WO 92/05281 (1992-04-01), None
patent: WO 01/23604 (2001-04-01), None
Ito T et al: “Structural comparison of three types of staphylococcal cassette chromosome med integrated in the chromosome in methicillini-resistantStaphylococcus aureaus.” Antimicrobial Agents and Chemotherapy, U.S. May 2001, ′Online! vol. 45, No. 5, May 2001, pp. 1323-1336; XP002238384; ISSN: 0066-4804.
& Database EMBL ′Online! May 14, 2001; retrieved from EBI, Database accession No. AB037671, XP002238391.
Database EMBL ′Online! Jan. 7, 2000; retrieved from EBI Database accession No. AB014433; XP002238392.
Hiramatsu K et al: “Genetic Basis for Molecular Epidemiology of MRSA” J Infect Chemother, vol. 2, 1996, pp. 117-129; XP001122060.
Oliveiera D C et al: “Genetic organization of the downstream region of the mecA element in methicillin-resistantStaphylococcus aureusisolates carrying different polymorphisms of this region.” Antimicrobial Agents and Chemotherapy. US, Jul. 2000, vol. 44, No. 7, Jul. 2000; pp. 1906-1910; XP002238385; ISSN: 0066-4804.
Ito T et al: “Cloning and nucleotide sequence determination of the entire mvc DNA of pre-methicillin-resistantStaphylococcus aureusN315.” Antimicrobial Agents and Chemotherapy. US, Jul. 1999; vol. 43, No. 6, Jun. 1999; pp. 1449-1468; XP002238386; ISSN: 0066-4804.
Katayama Y et al: “A new class of genetic element,Staphylococcuscassette chromosome mec, encodes methicillin resistance inStaphylococcus aureus.” Antimicrobial Agents and Chemotherapy, U.S. Jun. 2000; vol. 44, No. 6, Jun. 2000; pp. 1549-1555; XP002238387; ISSN: 0066-4804.
Kuroda M et al: “Whole geno me sequencing of meticillin-resistantStaphylococcus aureus” Lancet The, Lancet Limited. London, G.B., vol. 357, No. 9264; Apr. 21, 2001; pp. 1225-1240; XP004246103; ISSN: 0140-6736.
Ma Xiao Zue et al: “Novel type of staphylococcal cassette chromosome mec identified in community-acquired methicillin-resistantStaphylococcus aureusstrains.” Antimicrobial Agents and Chemotherapy, vol. 46, No. 4, Apr. 2002; pp. 1147-1152; XP002238388; ISSN: 0066-4804.
Oliveiera D C et al: “The evolution of pandemic clones of methicillin-resistantStaphylococcus aureus: identification of two ancestral genetic backgrounds and the associated mec elements.” Microbial Drug Resistance (Larchmont, N.Y) U.S. 2001 Winter, vol. 7, No. 4, Jan. 2001; pp. 349-361; XP009004903; ISSN: 1076-6294.
Baba Tadashi et al: Genome and virulence determinants of high virulence community-acquired MRSA. Lancet, England May 25, 2002; vol. 359, No. 9320; May 25, 2002; pp. 1819-1827; XP002238389; ISSN: 0140-6737.
Al-Soud, et al. “Capacity of nine thermostable DNA Polymerases to mediate DNA amplification in the presence of PCR-Inhibiting samples.”Appl. Environ. Microbial. 64(10): 3748-3753 (1998).
Al-Soud, et. al. “Effects of amplification facilitators on diagnostic PCR in the presence of blood, feces, and meat.”J. Clin. Microbiol. 38(12): 4463-4470 (2002).
Chakrabarti, et al. “Novel Sulfoxides Facilitate GC-Rich Template Amplification.”Biotechniques. 32: 866-874 (2002).
De Lencastre, et al. Methicillin-ResistantStaphylococcus aureusdisease in a Portuguese Hospital: Characterization of clonal Types by a Combination of DNA Typing Methods. Eur.J. Clin. Microbiol. Infect. Dis. 13: 64-73 (1994).
Deplano, et al. “In Vivo deletion of the methicillin resistancemecregion from the chromosome of IStaphylococcus aureusstrains.”J. Antimicrob. Chemotherapy, 46-617-619 (2000).
Egholm,et al. “PNA hybridizes to complementary oligoncleotides obeying the Watson-Crick hydrogen-bonding rules.”Nature. 365: 566-568 (1993).
Flores, et. al. “A rapid, inexpensive method for eluting DNA from Agarose or Acrylamide gel slices without toxic or chaotropic materials.”Biotechniques. 13: 205-206 (1992).
GenBank accession No. AF422691, version AF422691.1, Apr. 29, 2002, Oliveira et al.
GenBank accession No. AF411934, version AF411934.1, Mar. 5, 2002, Oliveira et al.
Hiramatsu, et al. “Analysis of Borderline-Resistant Strains of Methicillin-ResistantStaphylococcus aureusUsing Polymerase Chain Reaction.”Microbiol. Immunol. 36: 445-453 (1992).
Hiramatsu, et al. “The emergence and evolution of methicillin-resistantStaphylococcus aureus.” Trends in Microbiology. 9(10): 486-493 (2001).
Inglis, et al. “Induced deletions within a cluster of resistance genes in themecregion of the chromosome ofStaphylococcus aureus.” Gen Microbiol. 136:2231-2239 (1990).
Inglis, et al. “Methicillin-Sensitive and Resistant Homologues ofStaphylococcus aureusOccur together among Clinical Isolates.” J.Infect. Dis. N167:323-328 (1993).
Katayama, et al. “A New Class of Genetic Element,StaphylococcusCassette Chromosomemec, Encodes Methicillin resistance inStaphylococcus aureus.” Antimicrob. Agents Chemother. 44(6):1549-1555 (2000).
Kellogg, et al. “TaqStart Antibody™: “Hot Start” PCR facilitated by a neutralizing monoclonal antibody directed againstTaqDNA Polymerase.”Biotechniques. 16:1134-1137 (1994).
Koshkin, et al. “LNA (locked nucleic acids): Synthesis of the Adenine, Cytosine, Guanine, 5-Methylcytosine, Thymine and Uracil Bicyclonucleoside Monomers, Oligomerisation, and unprecedented nucleic acid recognition.”Tetrahedron. 54:3607-3630 (1998).
Kuroda, et al. “Whole genome sequencing of methicillin-resistantStaphylococcus aureus.” The Lancet. 357: 1225-1240 (2001).
Lawrence et al. “Consecutive isolation of homologous strains of methicillin-resistant and methicillin-susceptibleStaphylococcus aureusfrom a hospitalized child.”J. Hosp. Infect. 33:49-53 (1996).
Martineau, et. al. “Correlation between the Resistance Genotype Determined by Multiplex PCR Assays and the Antibiotic Susceptibility Patterns ofStaphylococcus aureausandStaphylococcus epidermis.” Antimicrob. Chemotherapy. 44(2): 231-238 (2000).
Murakami, et al. “Identification of Methicillin-Resistant Strains of Staphylococci by Polymerase Chain Reaction.”J. Clin Microbiol. 29(10):2240-2244 (1991).
Nichols, et al. “A universal nucleoside for use at ambiguous sites in DNA primers.”Nature. 369:492-493 (1994).
Partial International Search Report for International Application No. PCT/CA 02/00824 dated May 12, 2003.
Saito, et. al. “Immunological Detection of Penicillin-Binding Protein 2′ of Methicillin-Resistant Staphylococci by Using Monoclonal Antibodies Prepared from Synthetic Peptides.”J. Clin. Microbiol. 33(9): 2498-2500 (1995).
Simor, et al. “Characterization and Proposed Nomenclature of Epidemic Strains of Methicillin-ResistantStaphylococcus aureusin Canada.”CCDR25-12: 105-112 (Jun. 15, 1999).
Suzuki, et al. “Survey of Methicillin-Resistant Clinical Strains of Coagulase-Negative Staphylococci formecAGene Distribution.”Antimicrob. Agents Chemother. 36(2): 429-434 (1992).
U

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Methods for detection and identification of... does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Methods for detection and identification of..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Methods for detection and identification of... will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-4027128

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.