Methods and systems for conservative extraction of...

Data processing: measuring – calibrating – or testing – Measurement system in a specific environment – Biological or biochemical

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C700S001000, C305S008000

Reexamination Certificate

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07865313

ABSTRACT:
Methods and systems of extracting extensible motifs from a sequence include assigning a significance to extensible motifs within the sequence based upon a syntactic and statistical analysis, and identifying extensible motifs having a significance that exceeds a predetermined threshold.

REFERENCES:
patent: 6571230 (2003-05-01), Parida
Apostolico et al. conservative extraction of over-represented extensible motifs Bioinformatics vol. 21 Suppl. 1 pates i9-i18 (2005).
Brazma et al. Approaches to the Automatic Discovery of Patterns in Biosequences Journal of Computational Biology vol. 5, pp. 279-305 (1998).
Anne Bergeron, et al., “The Algorithmic of Gene Teams”, WABI 2002, LNCS 2452, pp. 464-476, 2002.
Anne Bergeron, et al., “On the Similarity of Sets of Permutations and Its Applications to Genome Comparison”, COCOON 2003, LNCS 2697, pp. 68-79, 2003.
Xin He, et al., “Identifying Conserved Gene Clusters in the Presence of Orthologous Groups”, RECOMB'04, Mar. 27-31, 2004, pp. 272-280.

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