Data processing: measuring – calibrating – or testing – Measurement system in a specific environment – Biological or biochemical
Reexamination Certificate
2005-03-29
2005-03-29
Hoff, Marc S. (Department: 2857)
Data processing: measuring, calibrating, or testing
Measurement system in a specific environment
Biological or biochemical
C707S793000
Reexamination Certificate
active
06873914
ABSTRACT:
The present invention provides methods and systems for organizing complex and disparate data. More specifically, the present invention provides methods and systems for organizing complex and disparate data into coherent data sets. Coherent data sets resulting from the methods and systems of the present invention serve as models for biological systems. Methods and systems for integrating data and creating coherent data sets are useful for numerous biological applications, such as, for example, determining gene function, identifying and validating drug and pesticide targets, identifying and validating drug and pesticide candidate compounds, profiling drug and pesticide compounds, producing a compilation of health or wellness profiles, determining compound site(s) of action, identifying unknown samples, and numerous other applications in the agricultural, pharmaceutical, forensic, and biotechnology industries.
REFERENCES:
patent: 5777888 (1998-07-01), Rine et al.
patent: 5965352 (1999-10-01), Stoughton et al.
patent: 5978804 (1999-11-01), Dietzman
patent: 6087090 (2000-07-01), Mascarenhas
patent: 6113763 (2000-09-01), Henry et al.
patent: 6132969 (2000-10-01), Stoughton et al.
patent: 6146830 (2000-11-01), Friend et al.
patent: 6197517 (2001-03-01), Roberts
patent: 6200803 (2001-03-01), Roberts
patent: 6203987 (2001-03-01), Friend et al.
patent: 6218122 (2001-04-01), Friend et al.
patent: 6221597 (2001-04-01), Roberts
patent: 6222093 (2001-04-01), Marton et al.
patent: 6278794 (2001-08-01), Parekh et al.
patent: 6312893 (2001-11-01), Van Ness et al.
patent: 6334099 (2001-12-01), Grace et al.
patent: 6416643 (2002-07-01), Henry et al.
patent: 6558955 (2003-05-01), Kristal et al.
patent: 6594588 (2003-07-01), Peden et al.
patent: 6680203 (2004-01-01), Dasseux et al.
patent: 6681198 (2004-01-01), Buote et al.
patent: 20020009740 (2002-01-01), Kaddurah-Daouk et al.
patent: 20020095260 (2002-07-01), Huyn et al.
patent: 20020145425 (2002-10-01), Ebbels et al.
patent: 20030023386 (2003-01-01), Aranibar et al.
patent: 20030130798 (2003-07-01), Hood et al.
patent: 20030229451 (2003-12-01), Hamilton et al.
patent: 20040002842 (2004-01-01), Woessner et al.
patent: 20040018500 (2004-01-01), Glassbrook et al.
patent: 20040018501 (2004-01-01), Allen et al.
patent: 20040019429 (2004-01-01), Coffin et al.
patent: 20040019430 (2004-01-01), Hurban et al.
patent: 20040023295 (2004-02-01), Hamilton et al.
patent: 20040024293 (2004-02-01), Lawrence et al.
patent: 20040024543 (2004-02-01), Zhang et al.
patent: 9603981 (1996-02-01), None
patent: 0051054 (2000-08-01), None
patent: 0065366 (2000-11-01), None
patent: 0065472 (2000-11-01), None
patent: 0157518 (2001-08-01), None
patent: 0210456 (2002-02-01), None
patent: 02057989 (2002-07-01), None
patent: 02085195 (2002-10-01), None
patent: 02086478 (2002-10-01), None
patent: 02086500 (2002-10-01), None
patent: 02086501 (2002-10-01), None
patent: 02086502 (2002-10-01), None
Khodadoust M & Klein T., “Redifining priorities in gene-based drug discovery”, 19 Nature Biotech: 707 (2001).
Wilson et al., “Assessing Annotation Transfer for Genomics: Quantifying the Relations between Protein Sequence, Structure and Function through Traditional and Probabilistic Scores”, 297 J.mol. Biol.: 233-249 (2000).
McGovern, P.G. et al., “Recent Trends in Acute Coronary Heart Disease: Mortality, Morbidity, Medical Care, and Risk Factors”, 334(14) New England J. Med.: 884-890 (1996).
Wilson, P.W.F. et al., “Prediction of Coronary Heart Disease Using Risk Factor Categories”, '97 Circulation: 1837-1847 (1998).
Detsky, A.S. et al., “Predicting Cardiac Complications in Patients Undergoing Non-cardiac Surgery”, i J. Gen. Int. Med.: 211-219 (1986).
Gail, M.H. et al., “Weighing the Risks and Benefits of Tamoxifen Treatment for Preventing Breast Cancer”, 91(21) J. Nat'l Cancer Inst.: 1829-1846 (1999).
Manning, A.P. et al., “Towards Positive diagnosis of the Irritable bowel”, 2 Brit. Med. J.: 653-654 (1978).
Sachidanadam, R. et al., “A Map of Human Genome Sequence variation containing 1.42 Million Single Nucleotide Polymorphisms”, 409 Nature: 928-933(2001).
Ward, E. & Benasconi, P., “Target-based discovery of crop protection chemicals”, 17 Nature Biotech: 618-19 (1999).
Davies, J.L. et al, “A genome-wide search for human type 1 diabetes susceptibility genes”, 371 Nature: 130-136 (1994).
Hashimoto, L.et al., “Genetic mapping of a susceptibility locus for insulin-dependent diabetes mellitus on chromosome 11q”, 371 Nature: 161-164 (1994).
Cho, H. et al., “Insulin Resistance and a Diabetes Mellitus-like Syndrome in Mice Lacking the Protein Kinase Akt2 (PKBβ)”, 292 Science: 1728-1731 (2001).
Boyes, D. et al.,“Growth Stage-Based Phenotypic Analysis of Arabidopsis: A model for High Throughput Functional Genomics in Plants”, 13 Plant Cell: 1499-1510 (2001).
Winkelmann, B.R.“Genomics and large scale phenotypic databases”, 2(1) Pharmacogenomics: 3-5(2001).
Owen, K. & Hattersley, A.T. “Maturity-onset diabetes of the young: from clinical description to molecular genetic characterization”, 15(3) Best Pract. Res. Clin. Endocrinol. Metab.: 309-323 (2001).
Labow, B.I. et al., “Mechanisms Governing the Expression of the Enzymes of Glutamine Metabolims-Glutaminase and Glutamine Synthetase1,2”, 131 J. Nutrition: 2467S-2474S (2001).
Treasure, R.A.R. et al., “Misdiagnosis of diabetic Ketoacidosis as hyperventilation syndrome”, 294 Br. Med. J. (clin. res.ed.): 630 (1987).
Laloux, S. et al., “Maladie coeliaque de L'adulte et diabète de type 1:Une Association génétique Sévère et parfois méconnue” 13 Diabètes & Métabolisme : 520-528 (1987).
Roessner, U. et al., “Metabolic Profiling Allows Comprehensive Phenotyping of Genetically or Environmentally Modified Plant Systems”, 13 Plant Cell: 11-29 (2001).
Glassbrook, N. et al., “Metabolic profiling on the right path”, 18 Nature Biotec: 1142-1143 (2000).
Selkov, E. & Gaasterland, T., “Reconstruction of Metabolic Networks Using Incomplete Information” 3 Proc. Intl. Conf. Intell.Syst. Mol. Biol.: 127-135 (1995).
Selkov, E. et al., “Functional analysis of gapped microbial genomes: Amino acid metabolism ofThiobacillus ferrooxidans”, 97(7) Proc. Nat'l Acad. Sci. U.S.A.: 3509-3514 (2000).
Covert, M.W. et al., “Metabolic modeling of microbial strains in silico”, 26(3) TRENDS in Biochem Sci.: 179-186 (2001).
Devine et al., “An Introduction to Herbicide Action”, Physiology of Herbicide Action (1993).
Daum, G. et al., “Biochemistry, Cell Biology and Molecular Biology of Lipids ofSaccharmyces Cerevisiae”, 14 Yeast: 1471-1510 (1998).
Lamb, D.C. et al., “Purification, Reconstitution, and Inhibition of Cytochrome P-450 SterolΔ22Desaturase from the Pathogenic FungusCandida glabrata”, 43 (7) Antimicrob. Agents andChemother.:1725-1728 (1999).
Oakley, K.L. et al., “In Vitro Activity of SCH—56592 and Comparison with Activities of Amphotericin B and Itraconazole againstAspergillus SPP.”, 41(5) Antimicrob. Agents Chemother.: 1124-1126 (1997).
De Backer, M.D. et al., “Genomic Profiling of the Response ofCandida albicansto Itraconazole Treatment Using a DNA Microarray”, 45(6) Antimicrob. Agents and Chemother: 1660-1670 (2001).
Jia, M.H. et al., “Global expression profiling of yeast treated with an inhibitor of amino acid biosynthesis, sufometuron methyl”, 3 Physiol. Genomics: 83-92 (2000).
Fiehn, O, “Metabolomics-the link between genotypes and phenotypes”, 48 Plant Mol. Biol.: 155-171 (2002).
Kuile, B.H. Ter & Westerhoff, H.V., “Transciptome meets metabolome: hierarchical and metabolic regulation of the glycolytic pathway”, 500 FEBS Lett.: 169-171(2001).
Halket, J.M. et al.,
Beecher Christopher
Broadwell David
Glassbrook Norman
Nye Gordon James
Popa-Burke Ioana
Hoff Marc S.
Hofmeyer Timothy G.
Icoria, Inc.
Kiefer Laura L.
Raymond Edward
LandOfFree
Methods and systems for analyzing complex biological systems does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with Methods and systems for analyzing complex biological systems, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Methods and systems for analyzing complex biological systems will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-3379610