Methods and reagents for detecting target binding by nucleic...

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C530S350000

Reexamination Certificate

active

08071288

ABSTRACT:
The present invention provides novel methods and reagents for detecting the binding of protein targets to nucleic acid ligands. Using Universal Protein Stains (UPS), proteins bound by nucleic acid ligands may be labeled with a detectable moiety. The methods and reagents are particularly useful for the detection of protein targets bound to multiplexed arrays of nucleic acid ligands. The present invention also provides novel methods for the multiplexed evaluation of photocrosslinking nucleic acid ligands. The methods allow one simultaneously to: (1) evaluate the performance (dynamic range) of a plurality of photocrosslinking nucleic acid ligands; and (2) assess the specificity of each photocrosslinking nucleic acid ligand for its cognate target protein. Photocrosslinking nucleic acid ligands with the most desirable properties can then be selected for use in diagnostic and prognostic medical assays. The present invention also provides a photocrosslinking nucleic acid ligand that binds specifically to HIV gp120MN.

REFERENCES:
patent: 4098876 (1978-07-01), Piasio et al.
patent: 4562157 (1985-12-01), Lowe et al.
patent: 4587044 (1986-05-01), Miller
patent: 4595661 (1986-06-01), Cragle et al.
patent: 4737453 (1988-04-01), Primus et al.
patent: 4743542 (1988-05-01), Graham et al.
patent: 4752566 (1988-06-01), Collins et al.
patent: 5035996 (1991-07-01), Hartley
patent: 5124246 (1992-06-01), Urdea et al.
patent: 5270163 (1993-12-01), Gold et al.
patent: 5382981 (1995-01-01), Inaba et al.
patent: 5412087 (1995-05-01), McGall et al.
patent: 5432099 (1995-07-01), Ekins et al.
patent: 5445934 (1995-08-01), Fodor et al.
patent: 5475096 (1995-12-01), Gold et al.
patent: 5476766 (1995-12-01), Gold et al.
patent: 5510270 (1996-04-01), Fodor et al.
patent: 5527894 (1996-06-01), Gold et al.
patent: 5556752 (1996-09-01), Lockhart et al.
patent: 5567588 (1996-10-01), Gold et al.
patent: 5582981 (1996-12-01), Toole et al.
patent: 5595877 (1997-01-01), Gold et al.
patent: 5599720 (1997-02-01), Ekins et al.
patent: 5605662 (1997-02-01), Heller et al.
patent: 5624711 (1997-04-01), Sundberg et al.
patent: 5639868 (1997-06-01), Janjic et al.
patent: 5654151 (1997-08-01), Allen et al.
patent: 5658738 (1997-08-01), Nadeau et al.
patent: 5681697 (1997-10-01), Urdea et al.
patent: 5688935 (1997-11-01), Stephens et al.
patent: 5744305 (1998-04-01), Fodor et al.
patent: 5756291 (1998-05-01), Griffin et al.
patent: 5763177 (1998-06-01), Gold et al.
patent: 5817785 (1998-10-01), Gold et al.
patent: 5843653 (1998-12-01), Gold et al.
patent: 5861254 (1999-01-01), Schneider et al.
patent: 5874218 (1999-02-01), Drolet et al.
patent: 5908745 (1999-06-01), Mirzabekov et al.
patent: 5955268 (1999-09-01), Granados et al.
patent: 5958691 (1999-09-01), Pieken
patent: 6001577 (1999-12-01), Gold et al.
patent: 6007987 (1999-12-01), Cantor et al.
patent: 6037137 (2000-03-01), Komoriya et al.
patent: 6140098 (2000-10-01), Balasubramanian et al.
patent: 6184042 (2001-02-01), Neumann et al.
patent: 6184364 (2001-02-01), Pieken et al.
patent: 6207446 (2001-03-01), Szostak et al.
patent: 6232462 (2001-05-01), Collins et al.
patent: 6242246 (2001-06-01), Gold et al.
patent: 6291184 (2001-09-01), Gold et al.
patent: 6344318 (2002-02-01), Gold et al.
patent: 6346611 (2002-02-01), Pagratis et al.
patent: 6412087 (2002-06-01), Matsumoto
patent: 6458539 (2002-10-01), Gold et al.
patent: 6458543 (2002-10-01), Gold et al.
patent: 6503715 (2003-01-01), Gold et al.
patent: 6544776 (2003-04-01), Gold et al.
patent: 6716583 (2004-04-01), Gold et al.
patent: 6942972 (2005-09-01), Farooqui et al.
patent: 7368236 (2008-05-01), Gold et al.
patent: 7709192 (2010-05-01), Gold et al.
patent: 7855054 (2010-12-01), Schneider et al.
patent: 2002/0037506 (2002-03-01), Lin et al.
patent: 2003/0162216 (2003-08-01), Gold et al.
patent: 2003/0219801 (2003-11-01), Lipshutz
patent: 2004/0209261 (2004-10-01), Keys et al.
patent: 2004/0219526 (2004-11-01), Reddy et al.
patent: 2004/0235053 (2004-11-01), Lam et al.
patent: 2005/0142582 (2005-06-01), Doyle et al.
patent: 2005/0227225 (2005-10-01), Krevolin
patent: 2005/0250147 (2005-11-01), Macevicz
patent: 2005/0288244 (2005-12-01), Manoharan et al.
patent: 2006/0057573 (2006-03-01), Gold et al.
patent: 2006/0105341 (2006-05-01), Krause et al.
patent: 2007/0003950 (2007-01-01), Shen et al.
patent: 2007/0161015 (2007-07-01), Zheng et al.
patent: 2007/0166741 (2007-07-01), Heil et al.
patent: 2007/0166742 (2007-07-01), Gold et al.
patent: 2008/0160535 (2008-07-01), Gold et al.
patent: 2009/0004667 (2009-01-01), Zichi et al.
patent: 2010/0317120 (2010-12-01), Heil et al.
patent: 2 183 661 (1987-06-01), None
patent: WO 88/09810 (1988-12-01), None
patent: WO 92/14842 (1992-03-01), None
patent: WO 92/14843 (1992-09-01), None
patent: WO 93/04204 (1993-03-01), None
patent: WO 95/08003 (1995-03-01), None
patent: WO 95/18377 (1995-07-01), None
patent: WO 95/21265 (1995-08-01), None
patent: WO 96/06950 (1996-03-01), None
patent: WO 96/41019 (1996-12-01), None
patent: WO 99/31119 (1999-06-01), None
patent: WO 99/31275 (1999-06-01), None
patent: WO 99/31275 (1999-06-01), None
patent: WO 01/06249 (2001-01-01), None
patent: WO 02/06510 (2002-01-01), None
patent: WO 2005/108609 (2005-11-01), None
Brody. The use of aptamers in large arrays for molecular diagnostics. Molecular Diagnostics, vol. 4(4), pp. 381-388, 1999.
Brody (1999) Molecular Diagnosis 4(4):381-388, The Use of Aptamers in Large Arrays for Molecular Diagnostics.
Drolet et al. (1996) Nature Biotechnology 14(8):1021-1025, An enzyme-linked oligonucleotide assay.
Gott et al .(1991) Biochemistry 30:6290-6295, A Specific, UV-Induced RNA-Protein Cross-Link Using 5-Bromouridine-Substitued RNA.
Ito et al. (1980) J. Am. Chem. Soc. 102:7535-7541, Acetone-Sensitized Photocoupling of 5-Bromouridine to Tryptophan Derivatives via Electro-Transfer Process.
Jayasena (1999) Clinical Chemistry 45(9):1628-1650, Aptamers: An Emerging Class of Molecules That Rival Antibodies in Diagnostics.
Jensen et al. (1995) Proc. Natl. Acad. Sci. USA 92:12220-12224,, Using in vitro selection to direct the covalent attachment of human immunodeficiency virus type 1 Rev protein to high-affinity RNA ligands.
Kleinjung et al. (1998) Analytical Chemistry 70:328-331, High-Affinity RNA as a Recognition Element in a Biosensor.
Lipshutz et al. (1995) Biotechniques 19(3):442-447, Using Oligonucleotide Probe Arrays to Access Genetic Diversity.
Scheller et al. (1997) Annals of the New York Academy of Sciences, Oct. 12, 1997, pp. 37-45, New Recognition Elements in Biosensing.
Szostak (1988) “Structure and Activity of Ribozymes” in Redesigning the Molecules of Life. (S.A. Benner ed.) Springer-Verlag Berlin Heidelberg, pp. 87-113.
Tuerk et al. (1990) Science 249-505, Systematic Evolution of Ligands by Exponential Enrichment: RNA Ligands to Bacteriophage T4 DNA Polymerase.
Jankolovits, J. (2008) J. Young Investigators 19(3):1-4, Studying pH Dependence of a Peptide Modification with an N-hydroxysuccinimide Ester Using Mass Spectroscopy.
Banks et al. (1995) Bioconjugate Chem 6:447-458, “Comparison of Three Common Amine Reactive Fluorescent Probes Used for Conjugation to Biomolecules by Capillary Zone Electrophoresis”.
Ekins and Chu (Sep. 1997) JIFCC 9(3):100-109, Immunoassay and Other Ligand Assays: Present Status and Future Trends.
Krull et al. (Oct. 1997) J. Chromatology. B, 699:173-208, “Labeling reactions applicable to chromatography and electrophoresis of minute amounts of proteins”.
McGown et al. (1995) Anal. Chem. 67:663A-668A, “The Nucleic Acid Ligand. A New Tool for Molecular Recognition”.
Potyrailo et al. (Aug. 1998) Anal. Chem. 70:3419-3425, “Adapting Selected Nucleic Acid Ligands (Aptamers) to Biosensors”.
Terpetschnig et al. (1994) Anal. Biochem. 217:197-204, “Synthesis of Squaraine-N-Hydroxysuccinimide Esters and Their Biological Application as Long-Wavelength Flurorescent Labels”.
Bier and Fürste, (Feb. 1997) EXS 80:97-120, “Nucleic Acid based sensors”.
Osborne et al. (1997) Current Opinion in Chemi

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Methods and reagents for detecting target binding by nucleic... does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Methods and reagents for detecting target binding by nucleic..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Methods and reagents for detecting target binding by nucleic... will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-4269939

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.