Methods and materials for canine breed identification

Data processing: measuring – calibrating – or testing – Measurement system in a specific environment – Biological or biochemical

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C702S020000, C703S013000, C707S793000, C435S006120

Reexamination Certificate

active

07729863

ABSTRACT:
In one aspect, the invention provides methods for determining the contributions of canid populations to a canid genome. The methods comprise the steps of: (a) obtaining the identity of one or both alleles in a test canid genome for each of a set of markers; and (b) determining the contributions of canid populations to the test canid genome by comparing the alleles in the test canid genome to a database comprising canid population profiles, wherein each canid population profile comprises genotype information for the set of markers in the canid populations.

REFERENCES:
patent: 5804388 (1998-09-01), Aguirre et al.
patent: 5874217 (1999-02-01), Halverson et al.
patent: 6210897 (2001-04-01), Andersson et al.
patent: 6274319 (2001-08-01), Messier et al.
patent: 6287254 (2001-09-01), Dodds
patent: 6331441 (2001-12-01), Balch et al.
patent: 6524609 (2003-02-01), Myers
patent: 6537213 (2003-03-01), Dodds
patent: 6576280 (2003-06-01), Bebiak
patent: 6730023 (2004-05-01), Dodds
patent: 2002/0022772 (2002-02-01), Dodds
patent: 2002/0081356 (2002-06-01), Bebiak et al.
patent: 2003/0135096 (2003-07-01), Dodds
patent: 2003/0139655 (2003-07-01), Dodds
patent: 2004/0146915 (2004-07-01), Ferrie et al.
patent: 2005/0090718 (2005-04-01), Dodds
patent: 2006/0008815 (2006-01-01), Rosenfeld et al.
patent: 2006/0147962 (2006-07-01), Jones
patent: 1 454 915 (2004-09-01), None
patent: WO 97/13876 (1997-04-01), None
patent: WO 97/31011 (1997-08-01), None
patent: 98/54360 (1998-12-01), None
patent: WO 00/56922 (2000-09-01), None
patent: 01/08720 (2001-02-01), None
patent: WO 01/11026 (2001-02-01), None
patent: 01/28415 (2001-04-01), None
patent: 01/84950 (2001-11-01), None
patent: WO 02/061659 (2002-08-01), None
patent: WO 02/102172 (2002-12-01), None
patent: 03/029912 (2003-04-01), None
patent: WO 2004/061124 (2004-07-01), None
patent: WO 2004/063390 (2004-07-01), None
patent: WO 2005/040350 (2005-05-01), None
Francisco, L.V., et al., “A Class of Highly Polymorphic Tetranucleotide Repeats for Canine Genetic Mapping,” Mammalian Genome 7:359-362, 1996.
Guyon, R., et al , “A 1-Mb Resolution Radiation Hybrid Map of the Canine Genome,” Proc. Natl. Acad. Sci. USA 100 (9):5296-5301, 2003.
“Affymetrix—DNA Analysis Products: The HG-U133 Plus Array is Here,” Affymetrix.com, © 2001, <http://www.affymetrix.com/products/application/dna—analysis—products.affx> [retrieved Nov. 13, 2003].
“Allele Frequency Analysis,” © 2003 SEQUENOM, Inc., <http://www.sequenom.com/Files/applications/allele—frequency—analysis.html> [retrieved Nov. 13, 2003].
Brouillette, J.A., and P.J. Venta, “Within-Breed Heterozygosity of Canine Single Nucleotide Polymorphisms Identified by Across-Breed Comparison,”International Society for Animal Genetics, Animal Genetics 33(6):464-467, Dec. 2002.
“Canine Parentage Verification and Identification,” © 2004 MetaMorphix, Inc., <http://www.metamorphixinc.com/about6a.html> [retrieved Nov. 10, 2004].
Corander, J., et al., “Bayesian Analysis of Genetic Differentiation Between Populations,”Genetics 163:367-374, Jan. 2003.
Cornuet, J.-M., et al., “New Methods Employing Multilocus Genotypes to Select or Exclude Populations as Origins of Individuals,”Genetics 153:1989-2000, Dec. 1999.
Das, M., et al., “A Set of Canine Interrepeat Sequence PCR Markers for High-Throughput Genotyping,”Physiol. Genomics 4:13-24, 2000.
Davies, N., et al., “Bioinvasions of the MedflyCeratitis Capitata: Source Estimation Using DNA Sequences at Multiple Intron Loci,”Genetics 153:351-360, Sep. 1999.
DeNise, S., et al., “Power of Exclusion for Parentage Verification and Probability of Match for Identity in American Kennel Club Breeds Using 17 Canine Microsatellite Markers,”International Society for Animal Genetics, Animal Genetics 35:14-17, Feb. 2004.
Falush, D., et al., “Inference of Population Structure using Multilocus Genotye Data: Linked Lock and Correlated Allele Frequencies,”Genetics164:1567-1587, Aug. 2005.
Fast-Track Genotyping Services: Powerful Full-Service Center to Accelerate Your Discovery, Illumina, Inc., San Diego, Cal., © 2003, 8-page brochure.
Fisher, M.C., et al., “Disease Surveillance in Recombining Pathogens: Multilocus Genotypes Identify Sources of HumanCoccidioidesInfections,”PNAS 99(13):9067-9071, Jun. 25, 2002.
Gordon, K., “Trait Leaders: California-based MMI Genomics Inc. Is Developing the Genetic Selection Tools of the Future,”ANGUSJournal:80-81, Apr. 2003.
“High Performance Genotyping,” © 2003 SEQUENOM, Inc., <http://www.sequenom.com/Files/applications/high—performance—genotyping.html> [retrieved Nov. 13, 2003].
Ichikawa, Y., et al., “Canine Parentage Testing Based on Microsatellite Polymorphisms,”J. Vet. Med. Sci. 63(11):1209-1213, Nov. 2001.
Irion, D.N., et al., “Analysis of Genetic Variation in 28 Dog Breed Populations With 100 Microsatellite Markers,”Journal of Heredity 94(1):81-87, 2003.
Jianbing, F., et al., “High-Density Fiber Optic Array Technology and Its Applications in Functional Genomic Studies,”Chinese Science Bulletin 48(18):1903-1905, Sep. 2003.
Kennedy, G.C., et al., “Large-Scale Genotyping of Complex DNA,”Nat Biotechnol. 21(10):1233-1237, Oct. 2003.
Koskinen, M.T., “Individual Assignment Using Microsatellite DNA Reveals Unambiguous Breed Identification in the Domestic Dog,”Animal Genetics 34:297-301, 2003.
Koskinen, M.T., et al., “Assessment of the Population Structure of Five Finnish Dog Breeds with Microsatellites,”Animal Genetics 31:310-317, 2000.
“MassARRAY Homogenous MassEXTEND™ (hME) Assay,” © 2003 SEQUENOM, Inc., <http://www.sequenom.com/Files/applications/hme—assay.html> [retrieved Nov. 13, 2003].
New MassARRAY™ Homogenous MassEXTEND™(hME)Assay, Sequenom Inc., San Diego, Cal., Bulletin 1021, n.d.
Pascual, M., et al., “Microsatellite Variation in Colonizing and Palearctic Populations ofDrosophila subobscura,” Mol. Biol. Evol. 18(5):731-740, 2001.
Rannala, B., and J.L. Mountain, Detecting Immigration by Using Multilocus Genotypes,Proc. Natl. Acad. Sci. USA 94:9197-9201, Aug. 1997.
Rosenberg, N. A., et al., “Empirical Evaluation of Genetic Clustering Methods Using Multilocus Genotypes from 20 Chicken Breeds,”Genetics 159:699-713, Oct. 2001.
Tiret, L., et al., “Assignation of Highly Polymorphic Markers on a Canine Purebred Pedigree,”Mammalian Genome 11:703-705, 2000.
Villablanca, D.N., and G.K. Roderick, “Determining the Source of Individuals: Multilocus Genotyping in Nonequilibium Population Genetic,” <http://www.ncbi.nlm.gov/entrez/query/fcgi?cmd=Retrieve &db=PubMed&list—uids=10234242&dopt=Abstract> (abstract),Trends in Ecology and Evolution(1):17-21, Jan. 1999.
Wilson, G.A., and B. Rannala, “Bayesian Inference of Recent Migration Rates Using Multilocus Genotypes,”Genetics 163:1177-1191, Mar, 2003.
Zajc, I., and J. Sampson, “Utility of Canine Microsatellites in Revealing the Relationships of Pure Bred Dogs,”The Journal of Heredity 90(1):104-107, Jan. 1999.
Brooks, M.B., et al., “von Willebrand Disease Phenotype and von Willebrand Factor Marker Genotype in Doberman Pinschers,”American Journal of Veterinary Research 62(3):364-369, Mar. 2001.
Brouillette, J.A., et al., “Estimate of Nucleotide Diversity in Dogs With a Pool-and-Sequence Method,”Mammalian Genome 11:1079-1086, 2000.
Caughey, G.H., et al., “Cloning and Expression of the Dog Mast Cell α-Chymase Gene,”Journal of Immunology 159:4367-4375, 1997.
Coronado, V.A., et al., “New Haplotypes in the Bedlington Terrier Indicate Complexity in Copper Toxicosis,”Mammalian Genome 14:483-491, 2003.
Kennedy, L.J., e

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Methods and materials for canine breed identification does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Methods and materials for canine breed identification, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Methods and materials for canine breed identification will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-4201981

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.