Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid
Reexamination Certificate
2011-07-19
2011-07-19
Whisenant, Ethan C (Department: 1634)
Chemistry: molecular biology and microbiology
Measuring or testing process involving enzymes or...
Involving nucleic acid
C536S023100, C536S024300
Reexamination Certificate
active
07981604
ABSTRACT:
The present invention features methods for analyzing a sequence of a target polynucleotide by detecting incorporation of a nucleotide into its complementary strand, where the polynucleotides may be bound at high density and at single molecule resolution. The invention also features labeling moieties and blocking moieties, which facilitate chain termination or choking. Certain aspects provide for temporal detection of the incorporations; some allow for asynchronous analysis of a plurality of target polynucleotides and the use of short sequencing cycles. Surface chemistry aspects of the sequencing methods are also provided. The method may also be used in kits, said kits designed to carry out and facilitate the methods provided herein.
REFERENCES:
patent: 3996345 (1976-12-01), Ullman et al.
patent: 4119368 (1978-10-01), Yamazaki
patent: 4153855 (1979-05-01), Feingold
patent: 4344064 (1982-08-01), Bitler et al.
patent: 4351760 (1982-09-01), Khanna et al.
patent: 4683195 (1987-07-01), Mullis et al.
patent: 4683202 (1987-07-01), Mullis
patent: 4707237 (1987-11-01), Lepp et al.
patent: 4711955 (1987-12-01), Ward et al.
patent: 4725677 (1988-02-01), Kosler et al.
patent: 4739044 (1988-04-01), Slabinskv
patent: 4757141 (1988-07-01), Fung et al.
patent: 4793705 (1988-12-01), Shera
patent: 4811218 (1989-03-01), Hunkapiller et al.
patent: 4863849 (1989-09-01), Melamede
patent: 4865968 (1989-09-01), Orgel et al.
patent: 4889818 (1989-12-01), Gelfand et al.
patent: 4942124 (1990-07-01), Church
patent: 4962037 (1990-10-01), Jett et al.
patent: 4971903 (1990-11-01), Hyman
patent: 4979824 (1990-12-01), Mathies et al.
patent: 4994368 (1991-02-01), Goodman et al.
patent: 4994372 (1991-02-01), Tabor et al.
patent: 4994373 (1991-02-01), Stavrianopoulos et al.
patent: 5085562 (1992-02-01), Van Lintel
patent: 5091652 (1992-02-01), Mathies et al.
patent: 5096388 (1992-03-01), Weinberg
patent: 5096554 (1992-03-01), Chin et al.
patent: 5108892 (1992-04-01), Burke et al.
patent: 5112736 (1992-05-01), Caldwell et al.
patent: RE34069 (1992-09-01), Koster et al.
patent: 5143854 (1992-09-01), Pirrung et al.
patent: 5167784 (1992-12-01), Noolandi
patent: 5171132 (1992-12-01), Miyazaki et al.
patent: 5198540 (1993-03-01), Koster
patent: 5209834 (1993-05-01), Shera
patent: 5224843 (1993-07-01), Van Lintel
patent: 5242796 (1993-09-01), Prober et al.
patent: 5242797 (1993-09-01), Hirschfeld
patent: 5258506 (1993-11-01), Urdea et al.
patent: 5259737 (1993-11-01), Kamisuki et al.
patent: 5260433 (1993-11-01), Engelhardt et al.
patent: 5265327 (1993-11-01), Faris et al.
patent: 5267152 (1993-11-01), Yang et al.
patent: 5302509 (1994-04-01), Cheeseman
patent: 5304487 (1994-04-01), Wilding et al.
patent: 5306403 (1994-04-01), Vo-Dinh
patent: 5320952 (1994-06-01), Deutch et al.
patent: 5336062 (1994-08-01), Richter
patent: 5360523 (1994-11-01), Middendorf et al.
patent: 5375979 (1994-12-01), Trah
patent: 5376252 (1994-12-01), Ekstrom et al.
patent: 5403709 (1995-04-01), Agrawal et al.
patent: 5405747 (1995-04-01), Jett et al.
patent: 5405783 (1995-04-01), Pirrung et al.
patent: 5409811 (1995-04-01), Tabor et al.
patent: 5424186 (1995-06-01), Fodor et al.
patent: 5436149 (1995-07-01), Barnes
patent: 5449767 (1995-09-01), Ward et al.
patent: 5476928 (1995-12-01), Ward et al.
patent: 5484701 (1996-01-01), Cocuzza et al.
patent: 5492806 (1996-02-01), Drmanac et al.
patent: 5514256 (1996-05-01), Douthart et al.
patent: 5518900 (1996-05-01), Nikiforov et al.
patent: 5525464 (1996-06-01), Drmanac et al.
patent: 5529465 (1996-06-01), Zengerle et al.
patent: 5534125 (1996-07-01), Middendorf et al.
patent: 5547839 (1996-08-01), Dower et al.
patent: 5547859 (1996-08-01), Goodman et al.
patent: 5556790 (1996-09-01), Pettit
patent: 5558991 (1996-09-01), Trainor
patent: 5599695 (1997-02-01), Pease et al.
patent: 5610287 (1997-03-01), Nikiforov et al.
patent: 5631734 (1997-05-01), Stern et al.
patent: 5632957 (1997-05-01), Heller et al.
patent: 5654149 (1997-08-01), Mendoza et al.
patent: 5659171 (1997-08-01), Young et al.
patent: 5670346 (1997-09-01), Reeve et al.
patent: 5674716 (1997-10-01), Tabor et al.
patent: 5675155 (1997-10-01), Pentoney, Jr. et al.
patent: 5688648 (1997-11-01), Mathies et al.
patent: 5695940 (1997-12-01), Drmanac et al.
patent: 5705018 (1998-01-01), Hartley
patent: 5707506 (1998-01-01), Douthart et al.
patent: 5710628 (1998-01-01), Waterhouse et al.
patent: 5712476 (1998-01-01), Renfrew et al.
patent: 5733729 (1998-03-01), Lipshutz et al.
patent: 5741640 (1998-04-01), Fuller
patent: 5741644 (1998-04-01), Kambara et al.
patent: 5744305 (1998-04-01), Fodor et al.
patent: 5744312 (1998-04-01), Mamone et al.
patent: 5750341 (1998-05-01), Macevicz et al.
patent: 5753788 (1998-05-01), Fodor et al.
patent: 5755943 (1998-05-01), Middendorf et al.
patent: 5756285 (1998-05-01), Fuller
patent: 5759014 (1998-06-01), Van Lintel
patent: 5759374 (1998-06-01), Takahashi et al.
patent: 5762876 (1998-06-01), Lincoln et al.
patent: 5763594 (1998-06-01), Hiatt et al.
patent: 5776767 (1998-07-01), Stevens et al.
patent: 5776782 (1998-07-01), Tsuji
patent: 5789168 (1998-08-01), Leushner et al.
patent: 5795722 (1998-08-01), Lacroix et al.
patent: 5795782 (1998-08-01), Church et al.
patent: 5807679 (1998-09-01), Kamb
patent: 5808045 (1998-09-01), Hiatt et al.
patent: 5830657 (1998-11-01), Leushner et al.
patent: 5831070 (1998-11-01), Pease et al.
patent: 5832165 (1998-11-01), Reichert et al.
patent: 5834758 (1998-11-01), Trulson et al.
patent: 5836750 (1998-11-01), Cabuz
patent: 5837832 (1998-11-01), Chee et al.
patent: 5837860 (1998-11-01), Anderson et al.
patent: 5846396 (1998-12-01), Zanzucchi et al.
patent: 5846727 (1998-12-01), Soper et al.
patent: 5853979 (1998-12-01), Green et al.
patent: 5858671 (1999-01-01), Jones
patent: 5861287 (1999-01-01), Metzker et al.
patent: 5863722 (1999-01-01), Brenner
patent: 5872244 (1999-02-01), Hiatt et al.
patent: 5876187 (1999-03-01), Afromowitz et al.
patent: 5876934 (1999-03-01), Duthie et al.
patent: 5882904 (1999-03-01), Riedl et al.
patent: 5885813 (1999-03-01), Davis et al.
patent: 5889165 (1999-03-01), Fodor et al.
patent: 5902723 (1999-05-01), Dower et al.
patent: 5908755 (1999-06-01), Kumar et al.
patent: 5916747 (1999-06-01), Gilchrist et al.
patent: 5922591 (1999-07-01), Anderson et al.
patent: 5922608 (1999-07-01), Farnsworth et al.
patent: 5928906 (1999-07-01), Koster et al.
patent: 5928919 (1999-07-01), Reha-Krantz et al.
patent: 5945283 (1999-08-01), Kwok et al.
patent: 5945284 (1999-08-01), Livak et al.
patent: 5945312 (1999-08-01), Goodman et al.
patent: 5945325 (1999-08-01), Arnold et al.
patent: 5948614 (1999-09-01), Chatterjee
patent: 5952174 (1999-09-01), Nikiforov et al.
patent: 5954932 (1999-09-01), Takahashi et al.
patent: 5958703 (1999-09-01), Dower et al.
patent: 5959781 (1999-09-01), Kintz et al.
patent: 5959837 (1999-09-01), Yu
patent: 5965446 (1999-10-01), Ishikawa
patent: 5968740 (1999-10-01), Fodor et al.
patent: 5974164 (1999-10-01), Chee
patent: 5976338 (1999-11-01), Fujita et al.
patent: 5981186 (1999-11-01), Gabe et al.
patent: 5981956 (1999-11-01), Stern
patent: 5994058 (1999-11-01), Senapathy
patent: 5994085 (1999-11-01), Cantor
patent: 6002471 (1999-12-01), Quake
patent: 6005663 (1999-12-01), Waterhouse et al.
patent: 6007309 (1999-12-01), Hartley
patent: 6015714 (2000-01-01), Baldarelli et al.
patent: 6017702 (2000-01-01), Lee et al.
patent: 6018041 (2000-01-01), Drmanac et al.
patent: 6020457 (2000-02-01), Klimash et al.
patent: 6024925 (2000-02-01), Little et al.
patent: 6025136 (2000-02-01), Drmanac
patent: 6028190 (2000-02-01), Mathies et al.
patent: 6030782 (2000-02-01), Anderson et al.
patent: 6043080 (2000-03-01), Lipshutz et al.
patent: 6046005 (2000-04-01), Ju et al.
patent: 6049380 (2000-04-01), Goodwin et al.
patent: 6051380 (2000-04-01), Sosnowski et al.
patent: 6066454 (2000-05-01), Lipshutz et al.
patent: 6071394 (2000-06-01), Cheng et al.
patent: 6077664 (2000-06-01), Slater et al.
patent: 6077674 (2000-06-01), Schleifer et al.
patent: 6087095 (2000-07-01), Rosenthal et al.
patent: 6087099 (2000-07-01), Gupte et al.
patent: 6094274 (20
Brown Rudnick LLP
California Institute of Technology
Meyers Thomas
Schoen Adam
Whisenant Ethan C
LandOfFree
Methods and kits for analyzing polynucleotide sequences does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with Methods and kits for analyzing polynucleotide sequences, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Methods and kits for analyzing polynucleotide sequences will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-2689275