Methods and compositions for clonal amplification of nucleic...

Chemistry: molecular biology and microbiology – Micro-organism – tissue cell culture or enzyme using process... – Preparing compound containing saccharide radical

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C435S006120, C536S023100, C536S024300

Reexamination Certificate

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07622281

ABSTRACT:
Described herein are methods and compositions relating to amplifying nucleic acid. In certain embodiments, the invention provides methods for labeling and amplifying a nucleic acid molecule.

REFERENCES:
patent: 4971903 (1990-11-01), Hyman et al.
patent: 5002867 (1991-03-01), Macevicz
patent: 5093245 (1992-03-01), Keith et al.
patent: 5185243 (1993-02-01), Ullman et al.
patent: 5302509 (1994-04-01), Cheeseman
patent: 5503980 (1996-04-01), Cantor
patent: 5547839 (1996-08-01), Dower et al.
patent: 5604097 (1997-02-01), Brenner
patent: 5639603 (1997-06-01), Dower et al.
patent: 5763175 (1998-06-01), Brenner
patent: 5780231 (1998-07-01), Brenner
patent: 5795714 (1998-08-01), Cantor et al.
patent: 5795716 (1998-08-01), Chee et al.
patent: 5846719 (1998-12-01), Brenner
patent: 5853989 (1998-12-01), Jeffreys et al.
patent: 5854033 (1998-12-01), Lizardi
patent: 5900481 (1999-05-01), Lough et al.
patent: 5902723 (1999-05-01), Dower et al.
patent: 5935793 (1999-08-01), Wong et al.
patent: 5942391 (1999-08-01), Zhang et al.
patent: 5981176 (1999-11-01), Wallace
patent: 6013445 (2000-01-01), Albrecht
patent: 6023540 (2000-02-01), Walt et al.
patent: 6027889 (2000-02-01), Barany et al.
patent: 6060245 (2000-05-01), Sorge
patent: 6107023 (2000-08-01), Reyes et al.
patent: 6143495 (2000-11-01), Lizardi et al.
patent: 6172218 (2001-01-01), Brenner
patent: 6210891 (2001-04-01), Nyren et al.
patent: 6225064 (2001-05-01), Uematsu et al.
patent: 6258568 (2001-07-01), Nyren
patent: 6268148 (2001-07-01), Barany et al.
patent: 6274320 (2001-08-01), Rothberg et al.
patent: 6280935 (2001-08-01), Macevicz
patent: 6306607 (2001-10-01), Williams
patent: 6327410 (2001-12-01), Walt et al.
patent: 6383754 (2002-05-01), Kaufman et al.
patent: 6406848 (2002-06-01), Bridgham et al.
patent: 6458530 (2002-10-01), Morris et al.
patent: 6534293 (2003-03-01), Barany et al.
patent: 6627402 (2003-09-01), Wallace
patent: 6812005 (2004-11-01), Fan et al.
patent: 6828100 (2004-12-01), Ronaghi
patent: 6890741 (2005-05-01), Fan et al.
patent: 6913884 (2005-07-01), Stuelpnagel et al.
patent: RE39793 (2007-08-01), Brenner
patent: 7323305 (2008-01-01), Leamon et al.
patent: 7399846 (2008-07-01), Southern et al.
patent: 2002/0132221 (2002-09-01), Chee et al.
patent: 2003/0068629 (2003-04-01), Rothberg et al.
patent: 2003/0108867 (2003-06-01), Chee
patent: 2003/0108900 (2003-06-01), Oliphant
patent: 2003/0162217 (2003-08-01), Rothberg et al.
patent: 2003/0170684 (2003-09-01), Fan
patent: 2003/0211489 (2003-11-01), Shen
patent: 2004/0101835 (2004-05-01), Willis et al.
patent: 2004/0197793 (2004-10-01), Hassibi et al.
patent: 2005/0130173 (2005-06-01), Leamon et al.
patent: 0799897 (1997-10-01), None
patent: 2156074 (1985-10-01), None
patent: WO-89/10977 (1989-11-01), None
patent: 9302360 (1993-02-01), None
patent: 9323564 (1993-11-01), None
patent: 9630392 (1996-10-01), None
patent: 9603212 (1996-11-01), None
patent: 9746704 (1997-12-01), None
patent: 9813523 (1998-04-01), None
patent: 9828440 (1998-07-01), None
patent: 9853300 (1998-11-01), None
patent: 0058516 (2000-10-01), None
patent: WO 02/061143 (2002-08-01), None
Shizuya, H. et al., Keio J. Med., vol. 50, pp. 26-30 (2001).
Dorre, K. et al., Bioimaging, vol. 5, pp. 139-152 (1997).
Vogelstein, B. et al., PNAS USA, vol. 96, pp. 9236-9241 (1999).
Bains et al., “A novel method for nucleic acid sequence determination,” J Theor Biol. 135(3):303-7, (1998).
Batzoglou et al., “Arachne: a whole-genome shotgun assembler,” Genome Res., 12(1):177-89, (2002).
Batzoglou et al., “Human and mouse gene structure: comparative analysis and application to exon prediction,” Genome Res., 10(7):950-8, (2000).
Braslavsky et al., “Sequence information can be obtained from single DNA molecules,” PNAS, 100(7):3960-3964, (2003).
Brenner et al., “Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays,” Nat Biotechnol., 18(6):630-4, (2000).
Brenner et al., “In vitro cloning of complex mixtures of DNA on microbeads: Physical separation of differentially expressed cDNAs,” PNAS, 97(4):1665-1670, (2000).
Collins et al., “The Human Genome Project: Lessons from Large-Scale Biology,” Science, 300:286-290, (2003).
Deamer et al., “Characterization of nucleic acids by nanopore analysis,” Acc Chem Res., 35(10):817-25, (2002).
Deamer et al., “Nanopores and nucleic acids: prospects for ultrarapid sequencing,” Trends Biotechnol., 18(4):147-51, (2000).
Dressman, et al., “Transforming single DNA molecules into fluorescent magnetic particles for detection and enumeration of genetic variations,” PNAS, 100(15):8817-8822, (2003).
Drmanac et al., “Accurate sequencing by hybridization for DNA diagnostics and individual genomics,” Nat Biotechnol., 16(1):54-8, (1998).
Drmanac et al., “DNA sequencing by hybridization with arrays of samples or probes,” Methods Mol Biol., 170:173-9 (2001).
Elahi et al., “Global Genetic Analysis,” Jour. of Biochem. and Mol. Biol., 37(1):11-27, (2004).
Emrich et al., “Microfabricated 384-lane capillary array electrophoresis bioanalyzer for ultrahigh-throughput genetic analysis,” Anal Chem., 74(19):5076-83, (2002).
Fodor et al., “Light-Directed, Spatially Addressable Parallel Chemical Synthesis,” Science, 251:767-773, (1991).
Jaffe et al., “Whole-genome sequence assembly for mammalian genomes: Arachne 2,” Res., 13(1):91-6, (2003).
Koutny et al., “Eight hundred-base sequencing in a microfabricated electrophoretic device,” Anal Chem., 72(14):3388-91, (2000).
Leamon et al., “A massively parallel PicoTiterPlate based platform for discrete picoliter-scale polymerase chain reactions,” Electrophoresis, 24(21):3769-77, (2003).
Levene et al., “Zero-Mode Waveguides for Single-Molecule Analysis at High Concentrations,” Science, 299:682-686, (2003).
Li et al., “DNA molecules and configurations in a solid-state nanopore microscope,” Nat Mater., 2(9):611-5, (2003).
Lipshutz et al., “Using oligonucleotide probe arrays to access genetic diversity,” Biotechniques.19(3):442-7, (1995).
Metzker et al., “Termination of DNA synthesis by novel 3′-modified-deoxyribonucleoside 5′- triphosphates,” Nucleic Acids Res. 22(20):4259-67, (1994).
Mitra et al., “In situ localized amplification and contact replication of many individual DNA molecules,” Nucleic Acids Res., 27(24):e34, (1999).
Mitra, et al., “Digital genotyping and haplotyping with polymerase colonies,” PNAS, 100(10):5926-5931, (2003).
Paegel et al., “Microfluidic devices for DNA sequencing: sample preparation and electrophoretic analysis,” Curr Opin Biotechnol., 14(1):42-50, (2003).
Patil, et al., “Blocks of Limited Haplotype Diversity Revealed by High-Resolution Scanning of Human Chromosome 21,” Science, 294:1719-1723, (2001).
Ronaghi et al., A sequencing method based on real-time pyrophosphate., Science, 281(5375):363, 365, (1998).
Ronaghi et al., “Analyses of secondary structures in DNA by pyrosequencing,” Anal Biochem., 267(1):65-71, (1999).
Ronaghi et al., “Pyrosequencing for microbial typing,” J Chromatogr B Analyt Technol Biomed Life Sci., 782(1-2):67-72, (2002).
Ronaghi et al., “Real-time DNA sequencing using detection of pyrophosphate release,” Anal Biochem., 242(1):84-9, (1996).
Ronaghi, M. “Pyrosequencing sheds light on DNA sequencing,” Genome Res., 11(1):3-11, (2001).
Ronaghi, M., “Pyrosequencing for SNP genotyping,” Methods Mol Biol., 212:189-95, (2003).
Sanger et al., “DNA sequencing with chain-terminating inhibitors,” Proc. Natl. Acad. Sci., 74(12):5463-5467, (1977).
Winters-Hilt et al., “Highly Accurate Classification of Watson-Crick Basepairs on Termini of Single DNA Molecules,” Biophysical Journal, 84:967-976, (2003).
Reeves, R. E., et al., &#

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