Methods and apparatus for screening and detecting multiple...

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C435S091100, C435S091200, C435S287200, C536S023100, C536S024300, C536S024330

Reexamination Certificate

active

07601493

ABSTRACT:
An assay system and methods are described where patient samples containing genomic DNA are analyzed for the presence of known genetic polymorphisms using a universal reporter strategy. In a preferred embodiment, the amplified DNA is localized at test sites in an array of sites on a microchip followed by a series of hybridization reactions that screen for the presence of a single mutation from among a number of mutations, and allow the identification of specific mutations. In addition to universal reporters, the assay may use blockers and discriminators for screening and identification of known polymorphisms.

REFERENCES:
patent: 3950738 (1976-04-01), Hayashi et al.
patent: 3995190 (1976-11-01), Salgo
patent: 4283773 (1981-08-01), Daughton et al.
patent: 4563419 (1986-01-01), Ranki et al.
patent: 4580895 (1986-04-01), Patel
patent: 4584075 (1986-04-01), Goldstein et al.
patent: 4594135 (1986-06-01), Goldstein
patent: 4731325 (1988-03-01), Palva et al.
patent: 4751177 (1988-06-01), Stabinsky
patent: 4787963 (1988-11-01), MacConnell
patent: 4807161 (1989-02-01), Comfort et al.
patent: 4816418 (1989-03-01), Mack et al.
patent: 4822566 (1989-04-01), Newman
patent: 4828979 (1989-05-01), Klevan et al.
patent: 4883750 (1989-11-01), Whiteley et al.
patent: 4908112 (1990-03-01), Pace
patent: 4988617 (1991-01-01), Landegren et al.
patent: 5030557 (1991-07-01), Hogan et al.
patent: 5063081 (1991-11-01), Cozzette et al.
patent: 5074977 (1991-12-01), Cheung et al.
patent: 5075077 (1991-12-01), Durley, III et al.
patent: 5096669 (1992-03-01), Lauks et al.
patent: 5096807 (1992-03-01), Leaback
patent: 5114674 (1992-05-01), Stanbro et al.
patent: 5125748 (1992-06-01), Bjornson
patent: 5126022 (1992-06-01), Soane et al.
patent: 5143854 (1992-09-01), Pirrung et al.
patent: 5164319 (1992-11-01), Hafeman et al.
patent: 5166063 (1992-11-01), Johnson
patent: 5200051 (1993-04-01), Cozzette et al.
patent: 5202231 (1993-04-01), Drmanac et al.
patent: 5219726 (1993-06-01), Evans
patent: 5227265 (1993-07-01), DeBoer et al.
patent: 5234566 (1993-08-01), Osman et al.
patent: 5242797 (1993-09-01), Hirschfeld
patent: 5304487 (1994-04-01), Wilding et al.
patent: 5312527 (1994-05-01), Mikkelsen et al.
patent: 5433819 (1995-07-01), McMeen
patent: 5434049 (1995-07-01), Okano et al.
patent: 5436129 (1995-07-01), Stapleton
patent: 5445525 (1995-08-01), Broadbent et al.
patent: 5445934 (1995-08-01), Fodor et al.
patent: 5464517 (1995-11-01), Hjerten et al.
patent: 5468646 (1995-11-01), Mattingly et al.
patent: 5474895 (1995-12-01), Ishii et al.
patent: 5516641 (1996-05-01), Ullman et al.
patent: 5516698 (1996-05-01), Begg et al.
patent: 5527670 (1996-06-01), Stanley
patent: 5552270 (1996-09-01), Khrapko et al.
patent: 5573907 (1996-11-01), Carrino et al.
patent: 5593838 (1997-01-01), Zanzucchi et al.
patent: 5602240 (1997-02-01), DeMesmaeker et al.
patent: 5605662 (1997-02-01), Heller et al.
patent: 5632957 (1997-05-01), Heller et al.
patent: 5635352 (1997-06-01), Urdea et al.
patent: 5653939 (1997-08-01), Hollis et al.
patent: 5660701 (1997-08-01), Grushka et al.
patent: 5681751 (1997-10-01), Begg et al.
patent: 5750015 (1998-05-01), Soane et al.
patent: 5766960 (1998-06-01), Cornell et al.
patent: 5770365 (1998-06-01), Lane et al.
patent: 5780233 (1998-07-01), Guo et al.
patent: 5789167 (1998-08-01), Konrad
patent: 5795714 (1998-08-01), Cantor et al.
patent: 5811269 (1998-09-01), Nadeau et al.
patent: 5849486 (1998-12-01), Heller et al.
patent: 5849489 (1998-12-01), Heller et al.
patent: 5849544 (1998-12-01), Harris et al.
patent: 5853993 (1998-12-01), Dellinger et al.
patent: 5908745 (1999-06-01), Mirzabekov et al.
patent: 5965452 (1999-10-01), Kovacs
patent: 6004752 (1999-12-01), Loewy et al.
patent: 6013166 (2000-01-01), Heller
patent: 6017696 (2000-01-01), Heller
patent: 6048690 (2000-04-01), Heller et al.
patent: 6051380 (2000-04-01), Sosnowski et al.
patent: 6054270 (2000-04-01), Southern
patent: 6068818 (2000-05-01), Ackley et al.
patent: 6071394 (2000-06-01), Cheng et al.
patent: 6099803 (2000-08-01), Ackley et al.
patent: 6129828 (2000-10-01), Sheldon, III et al.
patent: 6150095 (2000-11-01), Southern et al.
patent: 6207373 (2001-03-01), Sosnowski et al.
patent: 6306348 (2001-10-01), Havens et al.
patent: 6309602 (2001-10-01), Ackley et al.
patent: 6309823 (2001-10-01), Cronin et al.
patent: 6403367 (2002-06-01), Cheng et al.
patent: 6410231 (2002-06-01), Arnold et al.
patent: 6451526 (2002-09-01), Song et al.
patent: 6458584 (2002-10-01), Mirzabekov et al.
patent: 6468742 (2002-10-01), Nerenberg et al.
patent: 2001/0014449 (2001-08-01), Nerenberg et al.
Attachment for “genetic marker”.
Lannuzzi et al., Two frameshift mutations in the cystic fibrosis. Am. J. Hum. Genet., 48, 227-231, 1991.
Aaac, “Hemochromotosis More Prevalent Than Previously Believed”, Clinical Laboratory News, Feb. 1999, vol. 25, No. 2, p. 16.
Abrams et al., “Comprehensive Detection Of Single Base Changes In Human Genomic DNA Using Denaturing Gradient Gel Electrophoresis & GC Clamp”, Genomics, Aug. 1990, 463-475, vol. 7, No. 4.
AFFYMETRIX, Data Sheet, GeneChip® Human Genome Arrays, 2003, 1-4.
Anand et al., “Pulsed Field Gel Electrophoresis”,Gel Electrophoresis of Nucleic Acids—A Practical Approach, 1990, 101-123, Eds. D. Rickwood & B.D. Hames (New York: IRL Press).
Anderson et al, “Quantitative Filter Hybridization”,Nucleic Acid Hybridization-A Practical Approach, 1985, 73-111, Eds. B.D.Hames & S.J.Higgins (Washington, D.C.:IRL Press).
Bains, Setting A Sequence To Sequence A Sequence, Bio/Technology, 1992, 757-758, vol. 10.
Barinaga, “Will ‘DNA Chip’ Speed Genome Initiative?”, Science, 1991, 1489, vol. 253.
Beattie et al, “Genosensor Technology”,The 1992 San Diego Conference: Genetic Recognition, Nov. 1992, 1-5.
Beltz et al, “Isolation Of Multigene Families & Determination Of Homologies By Filter Hybridization Methods”, Methods in Enzymology, 1983, 266-285, vol. 100.
Bertina, “Mutation In Blood Coagulation Factor V Associated With Resistance To Activated Protein C”, Nature, 1994, 64-67, vol. 369.
Broude, N.E., et al. “Enhanced DNA Sequencing by Hybridization.” Proc. Natl. Acad. Sci., 1994, 3072-3076, vol. 91.
Brown et al, “Electrochemically Induced Adsorption Of Radio-Labelled DNA On Gold & HOPG Substrates For STM Investigations”, Ultramicroscopy, 1991, 253-264, vol. 38.
Conner et al, “Detection Of Sickle Cell β3—Globin Allele by Hybridization With Synthetic Oligonucleotides”, Proc.Natl.Acad.Sci.USA, 1983, 278-282, vol. 80.
Day, “Electrophoresis For Genotyping: Microliter Array Diagonal Gel Electrophoresis On Horizontal Polyacrylamide Gels, Hydrolink, Agarose”, Analytical Biochemistry, 1994, 389-395, vol. 222.
Drmanac et al, “Sequencing Of Megabase Plus DNA By Hybridization: Theory of the Method”, Genomics, 1989, 114-128, vol. 4.
Drmanac et al, “DNA Sequence Determination By Hybridization: A Strategy For Efficient Large Scale Sequencing”, Science, 1993, 1649-1652, vol. 260.
Drobyshev et al., Sequence Analysis By Hybridization With Oligonucleotide Microchip: Identification of β-Thalassemia Mutations, Gene 1997, 45-52, 188.
Drobyshev et al, “Massive Parallel Analysis Of DNA-Hoeschst 33258 Binding Specificity with A Generic Oligodeoxyribonucleotide Microchip”, Nucleic Acids Research, 1999, 4100-4105, vol. 27, No. 20.
Edman, C.F., et al. “Electric Field Directed Nucleic Acid Hybridization On Microchips.” Nucleic Acids Research, 1997, 4907-4914, vol. 25, No. 24.
Eggers et al, “Biochip Technology Development”, BioChip Technology Development, Lincoln Laboratory Technical Report 901, Nov. 9, 1990.
Feder, “The Hemochromatosis Founder Mutation In HLA-H Disrupts β2 Microglobulin Interaction & Cell Surface Expression”, J. Biological Chemistry, 1997, 14025-14028, vol. 272, No. 22.
Fiaccabrino et al., “

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Methods and apparatus for screening and detecting multiple... does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Methods and apparatus for screening and detecting multiple..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Methods and apparatus for screening and detecting multiple... will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-4087755

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.