Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid
Patent
1997-08-28
2000-02-15
Fredman, Jeffrey
Chemistry: molecular biology and microbiology
Measuring or testing process involving enzymes or...
Involving nucleic acid
435 5, 435 912, 436518, 536243, 536 2431, 536 2432, 536 2433, 2041828, C12Q 168, C12P 1934, G01N 2726, G01N 3353
Patent
active
060251360
ABSTRACT:
Sequencing by Hybridization (SBH) methods and apparatus employing subdivided filters for discrete multiple probe analysis of multiple samples may be used for DNA identification and for DNA sequencing. Partitioned filters are prepared. Samples are affixed to sections of partitioned filters and each sector is probed with a single probe or a multiplexed probe for hybridization scoring. Hybridization data is analyzed for probe complementarity, partial sequencing by SBH or complete sequencing by SBH.
REFERENCES:
patent: 4302204 (1981-11-01), Whal et al.
patent: 4486539 (1984-12-01), Ranki et al.
patent: 4562159 (1985-12-01), Shafritz
patent: 4563419 (1986-01-01), Ranki et al.
patent: 4613566 (1986-09-01), Potter
patent: 4667025 (1987-05-01), Miyoshi et al.
patent: 4677054 (1987-06-01), White et al.
patent: 4731325 (1988-03-01), Palva et al.
patent: 4766062 (1988-08-01), Diamond et al.
patent: 4770992 (1988-09-01), Van den Engh et al.
patent: 4775631 (1988-10-01), Saman
patent: 4789737 (1988-12-01), Miyoshi et al.
patent: 4794073 (1988-12-01), Dattagupta et al.
patent: 4806546 (1989-02-01), Carrico et al.
patent: 4806631 (1989-02-01), Carrico et al.
patent: 4849334 (1989-07-01), Lorinez
patent: 4851330 (1989-07-01), Kohne
patent: 4865967 (1989-09-01), Shiraishi et al.
patent: 4882269 (1989-11-01), Schneider et al.
patent: 4883750 (1989-11-01), Whiteley et al.
patent: 4885250 (1989-12-01), Eveleigh
patent: 4921805 (1990-05-01), Gebeyehu et al.
patent: 4942124 (1990-07-01), Church
patent: 4981783 (1991-01-01), Augenlicht
patent: 5002867 (1991-03-01), Macevicz
patent: 5008080 (1991-04-01), Brown, III et al.
patent: 5094939 (1992-03-01), Okada
patent: 5120643 (1992-06-01), Ching et al.
patent: 5202231 (1993-04-01), Drmanac
patent: 5310893 (1994-05-01), Erlich et al.
patent: 5348855 (1994-09-01), Dattagupta et al.
patent: 5354657 (1994-10-01), Holtke et al.
patent: 5405783 (1995-04-01), Pirrung et al.
patent: 5436327 (1995-07-01), Southern et al.
patent: 5492806 (1996-02-01), Drmanac et al.
patent: 5503980 (1996-04-01), Cantor
patent: 5525464 (1996-06-01), Drmanac et al.
patent: 5545531 (1996-08-01), Rava et al.
Bainst, W., and Smith, G.C., (1988), "A Novel Method for Nucleic Acid Sequence Determination," Journal of Theoretical Biology, 135: 303-307.
Beltz, G.A., Jacobs, K.A., Eickbush, T.H., Cherbas, P.T., and Kafatos, F.C., (1983), "Isolation of Multigene Families and Determination of Homologies by Filter Hybridization Methods," Methods in Enzymology, 100(19), 266-285.
Conner, B.J., Reyes, A.A., Morin, C., Itakura, K., Teplitz, R.L., and Wallace, R.B., (1983), "Detection of Sickle Cell .beta. .sup.S -globin Allele by Hybridization with Synthetic Oligonucleotides," Proc. Natl. Acad. Sci. USA, 80, 278-282.
Hobden, A.N., Read, M.J., Dykes, C.W., and Harford S., (1984), "M13 Clones Carrying Point Mutations: Identification by Solution Hybridization," Analytical Biochemistry, 144, 75-78.
Matthews, J.A., Kricka, L.J., (1988), "Analytical Strategies for the Use of DNA Probes," Review Article, Analytical Biochemistry, 169, 1-25.
Meinkoth, J., and Wahl, G., (1984), "Hybridization of Nucleic Acids Immobilized on Solid Supports," Review Article, Analytical Biochemistry, 138, 267-284.
Poustka, A., Phol, T., Barlow, D.P., Zehetner, G., Craig, A., Michiels, F., Ehrich, E., Frischauf, A.M., and Lehrach, H., (1986), "Molecular Approaches to Mammalian Genetics," Cold Spring Harbor Symposia on Quantitative Biology, LI, 131-139.
Syvanen, A.C., (1986), "Nucleic Acid Hybridization: From Research Tool to Routine Diagnostic Method," Review Article, Medical Biology, 64, 313-324.
Drmanac, R., Labat, I., Brukner, I., and Crkvenjakov, R., (1989), "Sequencing a Megabase Plus DNA by Hybridization: Theory of the Method," Genomics, 4, 114-128.
Gusev, V.D., Kulichkov, V.A., and Titkova, T.N., (1980), "Analysis of Genetic Texts. I. l-Gram Characteristics," Emperical Prediction and Recognition of Patterns, 83, 11-33.
Saiki, R.K., Walsh, P.S., Levenson, C.H., Erlich, H.A., (1989), "Genetic Analysis of Amplified DNA with Immobilized Sequence-Specific Oligonucleotide Probes," Proc. Natl. Acad. Sci. USA, 86, 6230-6234.
Drmanac, R., Labat, I., Strezoska, Z., Paunesku, T., Radosavljevic, D., Drmanac, S., and Crkvenjakov, R., (1990), "Sequencing by Oligonucleotide Hybridization: A Promising Framework in Decoding of the Genome Program?," Research Article, p. 47-59.
Besmer, P., Miller Jr. , R.C. , Caruthers, M.H., Kumar, A., Minamoto, K., Van De Sande, J.H., Sidarova, N., and Khorana, H.G., (1972), "Hybridization of Polydeoxynucleotides with Tyrosine Transfer RNA Sequences to the r-Strand of .o slashed.80psu.sub.III.sup.+ DNA," J. Mol. Biol., 72, 503-522.
Breslauer, K.J., Frank, R., Blocker, H., and Marky, L.A., (1986), "Predicting DNA Duplex Stability from the Base Sequence," Proc. Natl. Acad. Sci., 83, 3746-3750.
Craig, M.E., Crothers, D.M., and Doty, P., (1971), "Relaxation Kinetics of Dimer Formation by Self Complementary Oligonucleotides," J. Mol. Biol., 62, 383-401.
Craig, A.G., Nizetic, D., Hoheisel, J.D., Zehetner, G., and Lehrach, H., (1990), "Ordering of Cosmid Clones Covering the Herpes Simplex Virus Type I (HSV-I) Genome: A Test Case for Fingerprinting by Hybridisation," Nucleic Acids Research, 18(9), 2653-2660.
Drmanac, R., Lennon, G., Drmanac, S., Labat, I., Crkvenjakov, R., and Lehrach, H., (1990), "Partial Sequencing by Oligo-Hybridization: Concept and Applications in Genome Analysis," The First International Conference on Electrophoresis, Supercomputing and the Human Genome, pp. 66-70.
Gillam, S., Waterman, K., and Smith, M., (1975), "The Base-Pairing Specificity of Cellulose-pdT.sub.9," Nucleic Acids Research, 2(5), 625-634.
Ikuta, S., Takagi, K., Wallace, R.B., and Itakura, K., (1987), "Dissociation Kinetics of 19 Base Paired Oligonucleotide-DNA Duplexes Containing Different Single Mismatched Base Pairs," Nucleic Acids Research, 15(2) 797-811.
Khrapko, K.R., Lysov, Y.P., Khoryln, A.A., Shick, V.V., Florentiev, V.L., and Mirzabekov, A.D., (1989), "An Oligonucleotide Hybridization Approach to DNA Sequencing," Febs Letters, 256(1,2) 118-122.
Kohara, Y., Akiyama, K., and Isono, K., (1987), "The Physical Map of the Whole E. coli Chromosome: Application of a New Strategy for Rapid Analysis and Sorting of a Large Genomic Library," 50, 495-508.
Lewin, R., (1986), "Proposal to Sequence the Human Genome Stirs Debate," Research News, Molecular Biology of Homo Sapians, 232, 1598-1600.
Craig, A., Michiels, F., Zehetner, G., Sproat, B., Burmeister, M., Bucan, M., Poustka, A., Pohl, T., Frischauf, A.M., Lehrach, H., (1987), "Molecular Techniques in Mammalian Genetics: A New Era in Genetic Analysis," Human Genetics, pp. 126-132.
Wallace, R.B., Shaffer, J., Murphy, R.F., Bonner, J., Hirose, T., and Itakura, K., (1979), "Hybridization of Synthetic Oligodeoxyribonucleotides to .o slashed..sub..chi. 174 DNA: The Effect of Single Base Pair Mismatch," Nucleic Acids Research, 6(11) 3543-3557.
Wallace, R.B., Johnson, M.J., Hirose, T., Miyake, T., Kawashima, E.H., and Itakura, K., (1981), "The Use of Synthetic Oligonucleotides as Hybridization Probes, II. Hybridization of Oligonucleotides of Mixed Sequence to Rabbit .beta. -Globin DNA," Nucleic Acids Research, 9(4) 879-894.
Wetmur, J.G., Davidson, N., (1968), "Kinetics of Renaturation of DNA," J. Mol. Biol., 31, 349-370.
Wetmur, J.G., (1976), "Hybridization and Renaturation Kinetics of Nucleic Acids," Annual Review of Biophysics and Bioengineering, 5, 337-361.
Wood, W.I., Gitschier, J., Lasky, L.A., and Lawn, R.M., (1985), "Base Composition-Independent Hybridization in Tetramethylammonium Chloride: A Method for Oligonucleotide Screening of Highly Complex Gene Libraries," Proc. Natl. Acad. Sci. USA, 82, 1585-1588.
Angelini, G., De Preval, C., Gorski, J., and Mach, B., (1986), "High-Resolution Analysis of the Human HLA-DR Polymorphism by Hybridization with Sequence-Specific Oligonucleotide Probes," Proc. Natl. Acad. Sci. USA, 83, 4489-4493.
Berdoz, J., Gorski, Jack, Termijtelen, A.M., Dayer, J.M., Irle, C., Schendel, D., Mach, B., (1987), "Constitutive and Induced Expression of the Ind
Fredman Jeffrey
Hyseq Inc.
LandOfFree
Methods and apparatus for DNA sequencing and DNA identification does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with Methods and apparatus for DNA sequencing and DNA identification, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Methods and apparatus for DNA sequencing and DNA identification will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-1904745