Method of sorting a mixture of nucleic acid strands on a binary

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Patent

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

435 91, 536 231, 536 235, 536 243, 536 2433, 536 253, 536 274, 935 77, 935 78, 935 16, 935 17, 935 18, 935 19, C12Q 168

Patent

active

061034630

ABSTRACT:
A method of sorting mixtures of nucleic acid strands comprising hybridizing the strands to an array of immobilized oligonucleotides, each of which includes a constant segment adjacent to a variable segment. The constant segment of the immobilized oligonucleotides can be made complementary to the ends of strands obtained by digesting a double-stranded nucleic acid with a restriction enzyme and restoring the restriction sites, thereby permitting the sorting of strands according to their variable sequences adjacent to their constant terminal restored restriction sites.

REFERENCES:
patent: 5002867 (1991-03-01), Macevicz
Bains, et al., J. Theor. Biol., "A Novel Method for Nucleic Acid Sequence termination", vol. 135, pp. 303-307, 1988.
Khrapko, et al., "An Oligonucleotide Hybridization Approach to DNA Sequencing", FEBS Letters , vol. 256, No. 1, 2, pp. 118-122, Oct. 1989.
Sommer, et al., "Minimal Homology Requirements for PCR Primers", Nucleic Acids Research, vol. 17, No. 16, 1993, p. 6749.
Bains, W. (1990). Alternative Routes through the Genome, Bio/Technology 8, 1251-1256.
Barinaga, M. (1991). Will "DNA Chip" Speed Genome Initiative? Science 253, 1489.
Drmanac, R., Labat, I. and Crkvenjakov, R. (1991) An Algorithm for the DNA Sequence Generation from k-Tuple Word Contents of the Minimal Number of Random Fragments, J. Biomol. Struct. Dyn. 8,1085-1102.
Drmanac, R., Petrovic, N., Glisin, V. and Crkvenjakov, R. (1986). A Calculation of Fragment Lengths Obtainable from Human DNA with 78 Restriction Enzymes: An Aid for Cloning and Mapping, Nucleic Acids Res. 14, 4691-4692.
Frohman, M. A., Dush, M. K. and Martin, G. R. (1988). Rapid Production of Full-length cDNAs from Rare Transcripts: Amplification Using a Single Gene-Specific Oligonucleotide Primer, Proc. Natl. Acad. Sci. U.S.A. 85, 8998-9002.
Kaiser, R., Hunkapiller, T. and Hood, L. (1991). Light on Molecular Recognition, Nature 350, 656-657.
Loh, E. Y., Elliott, J. F., Cwirla, S., Lanier, L. L. and Davis, M. M. (1989). Polymerase Chain Reaction with Single-sided Specificity: Analysis of T Cell Receptor d Chain, Science 243, 217-220.
Martin, W. J. and Walmsley, R. M. (1990). Vision Assisted Robotics and Tape Technology in the Life-Science Laboratory: Application to Genome Analysis, Bio/Technology 8, 1258-1262.
Mills, D.R., Kramer, F.R., Dobkin, C., Nishihara, T., and Spiegelman, S. (1975). Nucleotide Sequence of Microvariant RNA: Another Small Replicating Molecule, Proc. Nat. Acad. Sci. USA 72, 4252-4256.
Mills, D.R., Kramer, F.R., and Spiegelman, S. (1973). Complete Nucleotide Sequence of a Replicating RNA Molecule, Science 180, 916-927.
Pevzner, P. A. (1989). 1-Tuple DNA Sequencing: Computer Analysis, J. Biomol. Struct. Dyn. 7, 63-73.
Poustka, A., Pohl, T. M., Barlow, D. P., Frischauf, A. M. and Lehrach, H. (1987). Construction and Use of Human Chromosome Jumping Libraries from Not I-digested DNA, Nature 325, 353-355.
Studier, F. W. (1989). A Strategy for High-volume Sequencing of Cosmid DNAs: Random and Directed Priming with a Library of Oligonucleotides, Proc. Natl. Acad. Sci. U.S.A. 86, 6917-6921.
Wada, A. (1987). Automated High-speed DNA Sequencing, Nature 325, 771-772.
Bains, W. and Smith, G. (1988). A Novel Method for Nucleic Acid Sequence Determination, J. Theor. Biol. 135, 303-307.
Drmanac, R., Labat, I., Brukner, I. and Crkvenjakov, R., Sequencing of Megabase Plus DNA by Hybridization: Theory of the Method, Genomics 4, 114-128 (1989).
Fisher, L. M. (1991). Microchips for Drug Compounds, The New York Times, p. F7, Mar. 3.
Fodor, S. P., Read, J. L., Pirrung, M. C., Stryer, L., Lu, A. T. and Solas, D. (1991). Light-directed, Spatially Addressable Parallel Chemical Synthesis, Science 251, 767-773.
Khrapko, K. R., Lysov, Yu. P., Khorlin, A. A., Shik, V. V., Florentiev, V. L. and Mirzabekov, A. D. (1989). An Oligonucleotide Hybridization Approach to DNA Sequencing, FEBS Lett. 256, 118-122.
Lysov, Yu. P., Florentiev, V. L., Khorlin, A. A., Khrapko, K. R., Shik, V. V. and Mirzabekov, A. D. (1988). Determination of the Nucleotide Sequence of DNA Using Hybridization to Oligonucleotides. A New Method, Doklady Akademii Nauk SSSR 303, 1508-1511.
Maskos, U. and Southern, E. M. (1991). Analyzing Nucleic Acids by Hybridization to Arrays of Oligonucleotides: Evaluation of Sequence Analysis, In: Genome Mapping and Sequencing (Abstracts of papers presented at the 1991 meeting arranged by M. Olson, C. Cantor & R. Roberts), p. 143, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
Agalwal, K. L., Yamazaki, A., Cashion, P. J. and Khorana, H. G. (1972). Chemical Synthesis of Polynucleotides, Angew. Chem. 11, 451-459.
Barone, A. D., Tang, J.-Y. and Caruthers, M. H. (1984). In situ Activation of Bis-dialkylaminophosphines--A New Method for Synthesizing Deoxyoligonucleotides on Polymer Supports, Nucleic Acids Res. 12, 4051-4061.
Belagaje, R. and Brush, C. K. (1982). Polymer Supported Synthesis of Oligonucleotides by a Phosphotriester Method, Nucleic Acids Res. 10, 6295-6303.
Caruthers, M. H., Barone, A. D., Beaucage, S. L., Dodds, D. R., Fisher, E. F., McBride, L. J., Matteucci, M., Stabinski, Z. and Tang, J.-Y. (1987). Chemical Synthesis of Deoxyoligonucleotides by the Phosphoramidite Method, Methods Enzymol. 154, 287-313.
Chou, S. H., Flynn, P. and Reid, B. (1989). Solid-phase Synthesis and High-resolution NMR Studies of Two Synthetic Doublehelical RNA Dodecamers: r(CGCGAAUUCGCG) and r(CGCGUAUACGCG), Biochemistry 28, 2422-2435.
Djurhuus, H. W., Staub, A. and Chambon, P. (1987). The Segmented Paper Method: DNA Synthesis and Mutagenesis by Rapid Microscale "Shotgun Gene Synthesis", Methods Enzymol. 154, 250287.
Frank, R., Meyerhans, A., Schwellnus, K. and Blocker, H. (1987). Simultaneous Synthesis and Biological Applications of DNA Fragments: An Efficient and Complete Methodology, Methods Enzymol. 154, 221-249.
Ghosh, S. S. and Musso, G. F. (1987). Covalent Attachment of Oligonucleotides to a Solid Support, Nucleic Acids Res. 15, 5353-5372.
Gingeras, T. R., Kwoh, D. Y. and Davis, G. R. (1987). Hybridization Properties of Immobilized Nucleic Acids, Nucleic Acids Res. 15, 5373-5390.
Horvath, S. J., Firca, J. R., Hunkapiller, T., Hunkapiller, M. W. and Hood, L. (1987). An Automated DNA Synthesizer Employing Deoxynucleoside 3'-Phosphoramidites, Methods Enzymol. 154, 314-326.
Kremsky, J. N., Wooters, J. L., Dougherty, J. P., Meyers, R. E., Collins, M. and Brown, E. L. (1987). Immobilization of DNA via Oligonucleotides Containing an Aldehyde or Carboxylic Acid Group at the 5' Terminus, Nucleic Acids Res. 15, 2891-2909.
Markham, A. F., Edge, M. D., Atkinson, T. C., Greene, A. R., Heathcliffe, G. R., Newton, C. R. and Scanlon, D. (1980). Solid Phase Phosphotriester Synthesis of Large Oligodeoxyribonucleotides on a Polyamide Support, Nucleic Acids Res. 8, 5193-5205.
Matsukura, M., Zon, G., Shinozuka, K., Stein, C. A., Mitsuya, H., Cohen, J. S. and Broder, S. (1988). Synthesis of Phosphorothioate Analogs of Oligodeoxyribonucleotides and Their Antiviral Activity Against Human Immunodeficiency Virus, Gene 72, 343-347.
Milligan, J. F. and Uhlenbeck, O. C. (1989). Determination of RNA-Protein Contacts Using Thiophosphate Substitutions, Biochemistry 28, 2849-2855.
Norris, K. E., Norris, F. and Brunfeldt, K. (1980). Solid Phase Synthesis of Oligonucleotides on a Crosslinked Polyacrylmorpholide Support, Nucleic Acids Symp. Ser. 7, 233-241.
Romanova, E. A., Oretskaia, T. S., Sukhomlinov, V. V., Krynetskaia, N. F., Metelev, V. G. and Shabarova, Z. A. (1990). Hybridase Cleavage of RNA. II. Automatic Synthesis of Mixed Oligonucleotide Probes, Bioorg. Khim. (Moscow) 16, 1348-1354.
Rosenthal, A., Cech, D., Veiko, V, P., Orezkaja, T. S., Kuprijanova, E. A. and Shabarova, Z. A. (1983). Triester Solid Phase Synthesis of Oligodeoxyribonucleotides on a Polystyreneteflon Support, Tetrahedron Lett. 24, 1691-1694.
Scaringe, S. A., Francklyn, C. and Usman, N. (1990). Chemical Synthesis of Biologically Active Oligoribonucleotides Using b-Cyanoethyl Protected Ribonucleoside Phosphoramidites, Nucleic Acids Res. 18, 5433-5441.
Veniaminova, A. G., Gorn, V. V., Zenkova, M. A., K

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Method of sorting a mixture of nucleic acid strands on a binary does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Method of sorting a mixture of nucleic acid strands on a binary , we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Method of sorting a mixture of nucleic acid strands on a binary will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-2005091

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.