Method for the synthesis of nucleic acid without protecting...

Organic compounds -- part of the class 532-570 series – Organic compounds – Carbohydrates or derivatives

Reexamination Certificate

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C536S025340

Reexamination Certificate

active

07807821

ABSTRACT:
A phosphoramidite method for the synthesis of a nucleic acid oligomer without protecting the base moiety characterized in that a 3′ or 5′ hydroxyl group of a nucleotide is reacted with a nucleoside phosphoramidite, a cyclonucleoside phosphoramidite, a 2′-substituted nucleoside phosphoramidite, a 4′-substituted nucleoside phosphoramidite, or a 2′,4′-di-substituted nucleoside phosphoramidite to produce a phosphodiester linkage. The phosphoramidite is contacted with an activator containing both a) hydroxybenzotriazole-1-ol (HOBt), a mono-substituted HOBt, a di-substituted HOBt, or a di-substituted phenol and b) imidazole, tetrazole, benzimidazoletriflate (BIT), 4-ethylthiotetrazole, imidazolium triflate(trifluoromethane sulfonate) or 4,5-dicyanoimidazole.

REFERENCES:
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Ohkubo et al., “A New Approach for Pyrophosphate Bond Formation Starting from Phosphoramidite Derivatives by Use Of 6-Trifluoromethyl-1-Hydroxybenzotriazole-Mediated O-N Phosphoryl Migration”; Tetrahedron Letters, Elsevier, Amsterdam, vol. 45, No. 5 , Jan. 26, 2004, pp. 979-982.
Seio K. et al., “Enhanced Stereoselectivity in Internucleotidic Bond Formation by the Use of The Chiral Ribose Moiety of Thymidine”, Journal of Organic Chemistry, American Chemical Society, vol. 68, Jan. 1, 2003, pp. 3849-3859.
M. Sekine et al., “Proton-Block Strategy for the Synthesis of Oligodeoxynucleotides Without Base Protection, Capping Reaction, and P-N Bond Cleavage Reaction”, Journal of Organic Chemistry, American Chemical Society, vol. 68, No. 14, 2003, pp. 5478-5492.
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