Method for stabilization of proteins using non-natural amino...

Drug – bio-affecting and body treating compositions – Designated organic active ingredient containing – Peptide containing doai

Reexamination Certificate

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C530S324000, C530S350000, C530S371000

Reexamination Certificate

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07449443

ABSTRACT:
The present invention provides a method for producing modified stable polypeptides introducing at least one non-natural amino acid into the hydrophobic region of the polypeptide. The thermal and chemical stability of such polypeptides is improved compared to those properties of its corresponding wild type proteins.The invention further provides purified leucine zipper and coiled-coil proteins in which the leucine residues have been replaced with 5,5,5-trifluoroleucines, and the modified proteins so produced demonstrate increased thermal and chemical stability compared to their corresponding wild-type natural proteins.

REFERENCES:
patent: 4879223 (1989-11-01), Miyazawa et al.
Huffman et al. ‘Substrate Specificity of Isopenicillin N Synthase.’ J. Med. Chem. vol. 35, pp. 1897-1914, 1992.
Berendsen, Herman. “A Glimpse of the Holy Grail?” Science. vol. 282, pp. 642-643.
Schneider et al. “A Designed Buried Salt Bridge in a Heterodimeric Coiled Coil,” J. of Am. Chem. Soc. vol. 119, No. 24: Jun. 18, 1997, pp. 5742-5743.
Hirst et al. “Predicting leucine zipper structures from sequence,” Protein Engineering Desing and Protein, vol. 9, No. 8, pp. 657-662, 1996.
Nomizu et al. Assembly of Synthetic Laminin Pepties into a Triple-Stranded Coiled Coil Structure. J. of Biol. Chem. vol. 269, No. 48. pp 30386-30392. 1994.
Bauer et al. Computational approaches to identify Leucine zippers. Nucleic Acid Research, vol. 26, No. 11, pp. 2740-2746. 1998.
Arai et al., “Synthesis of [Hexafluorovalyl]Gramicidin S”,Bull Chem Soc Jpn. 1996, 69:1383-89.
Russell et al.,Chem Abstract1986, 104:202518b.
Koide et al., “Biosynthesis of Epidermal Growth Factor Having Nonprotein Amino Acid Residue byEscherichia coli”, Amino Acids: Chem., Biol. Med., [Pap. Int. Congr. Amion Acid Res.] 1990 (Meeting Date 1989), 193-200, Abstract (1992) (An No. 1992:122148).
Aizawa, Y. et al., “Stability of the Dimerization Domain Effects the Cooperative DNA Binding of Short Peptides”,Biochemistry(1999), 38, 4008-4017.
Arndt, K. et al., “GCN4 protein, a positive transcription factor in yeast, binds general control promoters at all 5′ TGACTC 3′ sequences”,Proc. Natl. Acad. Sci. USA, (1986), 83, 8516-8520.
Baldwin, E. et al., “Thermodynamic and Structural Compensation in “Size-switch” Core Repacking Variants of Bacteriophage T4 Lysozyme”,J. Mol. Biol. (1996), 259: 542-559.
Chao, H. et al., Kinetic Study on the Formation of a de Novo Designed Heterodimeric Coiled-Coil: Use of Surface Plasmon Resonance to Monitor the Association and Dissociation of Polypeptide Chains:,Biochemistry(1996), 35: 12175-12185.
Chenault, H. K. et al., “Kinetic Resolution of Unsaturated and Rarely Occuring Samino Acids: Enanatioselective Hydrolysis of N-Acyl Amino Acids Catalyzed by Acylase I”,J. Am. Chem. Soc. (1989), I I I, 6354-6364.
Cornish, V. M. et al., “Probing Protein Structure and Function with an Expanded Genetic Code”,Angew. Chem. Int. Ed. Engl. (1995), 34: 621-633.
d'Avignon, D. A. et al., “Thermodynamic and kinetics of a folded-folded transition at Valine-9 of a GCN4-like leucine zipper”,Biophys. J. (1999), 76: 2752-2759.
Dahiyat, B.L. et al., “De Novo Protein Design: Fully Automated Sequence Selection”Science(1997), 278: 82-87.
DeGrado, W. F. et al., “De Novo Design and Structural Characterization of Proteins and Metalloproteins”,Annu. Rev. Biochem. (1999), 68: 779-819.
Duewel, H. et al., “Incorporation of Trifluoromethionine into a Phage Lysozyme: Implication and a New Marker for Use in Protein 19F NMR”,Biochemistry(1997), 36, 3404-3416.
Ellenberger, T. E. et al., “The GCN4 Basic Region Leucine Zipper Binds DNA as a Dimer of Unintterrupted α Helices: Crystal Structure of the Protein-DNA Complex”Cell(1992), 71: 1223-1237.
Fersht, A. R. et al., “Principles of protein stability derived from protein engineering experiments”,Curr. Opin. Struct. Biol. (1993),3: 75-83.
Ghosh, A. et al. “Generalized Born Model Based on a Surface Integral Formulation”J. Phys. Chem. B, (1998) 102, 10983-10990.
Giver, L. et al., “Directed evolution of a therostable esterase”,Proc. Natl. Acad. Sci. USA(1998), 95: 12809-12813.
Gonzales, L. et al., “Crystal structures of a single coiled-coil peptide in two oligomeric states reveal the basis for structural polymorphism”,Nat. Struct. Biol. (1996), 3: 1002-1100.
Gough, C. A. et al., “Calculations of the relative free energies of aqueous solvation of several fluorocarbons: A test of the bond potential of mean force correction”J. Chem. Phys. (1993), 99: 9103-9110.
Handel, T. M. et al., “Metal Ion-Dependent Modulation of the Dynamics of a Designed Protein”,Science, (1993), 261: 879-885.
Harbury, P. B. et al., “A Switch Between Two-, Three-, and Four- Stretched Coiled Coils in GCN4 Leucine Zipper Mutants”,Science, (1993), 262, 1401-1407.
Harpaz, Y. et al., “Volume changes on protein folding”,Structure(1994), 2: 641-649. (Exhibit 19).
Hill, C. P. et al., “The structure of granulocyte-colony-stimulating factor and its relationship to other growth factors”Proc. Natl. Acad. Sci. USA(1993), 90, 5167-5171.
Hine, J. et al., “The Intrinsic Hydrophilic Character of Organic Compounds, Correlations in Terms of Structural Contributions”,J. Org. Chem. (1975), 40: 292-297.
Hockings, S.C. et al., “Characterization of the ATF/CREB site and its complex with GCN4”,Proc. Natl. Acad. Sci. USA(1998), 95: 1410-1415.
Keller, P. et al., “Crystal Structure of a Bzip/dna Complex at 2.2 A: Determinants of DNA Specific Recognition”,J. Mol. Biol. (1995), 254: 657-667.
Kenar, K. T. et al., “A calorimetric characterization of the salt dependence of the stability of the GCN4 leucine zipper”,Protein Sci. (1995), 4: 1934-1938.
Konig, P. et al., “The X-ray Structure of the GCN4-Bzip Bound to ATF/CREB Site DNA Shows the Complx Depends on DNA Flexibility”,J. Mol. Biol. (1993), 233: 139-154.
Kono, H. et al., “Designing the hydrophobic core ofThermus flavusmalate dehydrogenase based on side-chain packing”,Protein Eng. (1998), 11: 47-52.
Kroll, D. J. et al., “A Multifunctional Prokaryotic Protein Expression System: Overproduction, Affinity Purification, and Selective Detection”,DNA Cell Biol(1993), 12: 441-53.
Krylov, D. et al., “A thermodynamic scale for leucine zipper stability and dimerization specificity: e and g interhelical interactions”,EMBO J. (19940, 13: 2849-2861.
Lee, B. et al., “Stability of protein structures”,Curr. Opin. Biotech. (1997), 8: 423-426.
Lim, K-T. et al., “Molecular Dynamics for Very Large Systems on Massively Parallel Computers: The MPSim program”,J. Comp. Chem. (1997), 18: 501-521.
Lubienski, M. J. et al., “Three-Dimensional Solution Structure and13C Assignments of Barstar Using Nuclear Magnetic Resonance Spectroscopy”,Biochemistry(1994), 33: 8866-8877.
Lumb, K. J. et al., “Measurement of Interhelical Electrostatic Interactiona in the GCN4 Leucine Zipper”,Science(1995), 268: 436-438.
Matthews, B. W. “Studies on Protein Stability with T4 Lysozyme”,Adv. Protein Chem. (1995), 46: 249 1995.
Mendel, D. et al., “Probing Protein Stability with Unnatural Amino Acids”,Science(1992), 256, 1798-1802.
Mer, G. et al., “Stablization of proteins by glycosylation examined by NMR analysis of a fucosylated proteinase inhibitor”,Nat. Struct. Biol. (1996), 3: 45-53.
Metallo, S. J. et al., “Distribution of labor among bZIP segments in the control of DNA affinity and specificity”,Chem. Biol. (1994), 1: 143-151.
Mohanty, D. et al., “DeNovo Simulations of the Folding Thermodynamics of the GCN4 Leucine Zipper”,Biophys. J. (1999), 77: 54-69.
Moitra, J. et al., &#

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