Method for simulataneous identification of differentially expres

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Patent

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

435 911, 435 913, 536 2433, C12Q 168, C12P 1934, C07H 2104

Patent

active

058076808

ABSTRACT:
An improved method for the simultaneous sequence-specific identification of mRNAs in a mRNA population allows the visualization of nearly every mRNA expressed by a tissue as a distinct band on a gel whose intensity corresponds roughly to the concentration of the mRNA. In general, the method comprises the formation of cDNA using anchor primers to fix a 3'-endpoint, producing cloned inserts from the cDNA in a vector containing a bacteriophage-specific promoter for subsequent RNA synthesis, generating linearized fragments of the cloned inserts, preparing cRNA, transcribing cDNA from the cRNA using a set of primers, and performing PCR using a 3'-primer whose sequence is derived from the vector and a set of 5'-primers that is derived from the primers used for transcription of cDNA from cRNA. The method can identify changes in expression of mRNA associated with the administration of drugs or with physiological or pathological conditions.

REFERENCES:
Nadeau, J.H., Bedigian, H.G., Bouchard, G., Denial, T., Kosowsky, M., Norberg, R., Pugh, S., Sargeant, E., Turner, R., and Paigen, B., (1992) Multilocus markers for mouse genome analysis PCR amplification based on single primers of arbitrary nucleotide sequence. Mammalian Genome 3:55-64 (Exhibit 1).
Woodward, S.R., Sudweeks, J., and Teuscher, C., (1992) Random sequence oligonucleotide primers detect polymorphic DNA products which segregate in inbred strains of mice. Mammalian Genome 3:73-78 (Exhibit 2).
Bishop, J.O., (1974) The Gene Numbers Game. Cell 2:81-86 (Exhibit 3).
Ohta, T. and Kimura, M., (1971) Functional Organization of Genetic Material as a Product of Molecular Evolution. Nature 233:118-119 (Exhibit 4).
Hastie, N.D., and Bishop, J.O., (1976) The Expression of Three Abundance Classes of Messenger RNA in Mouse Tissues. Cell 9:761-774 (Exhibit 5).
Bantle, J.A., and Hahn. W.E., (1976) Complexity and Characterization of Polyadenylated RNA in the Mouse Brian. Cell 8:139-150 (Exhibit 6).
Chikaraishi, D.M., (1979) Complexity of Cytoplasmic Polyadenylated and Nonpolyadenylated Rat Brain Ribonucleic Acids. Biochemistry 18(15):3249-3256 (Exhibit 7).
Milner, R.J., and Sutcliffe, J.G., (1983) Gene expression in rat brain. Nucleic Acids Research 11(16):5497-5520 (Exhibit B).
Sutcliffe, J.G., (1988) mRNA in the Mamalian Central Nervous System. Ann. Rev. Neurosci. 11:157-98 (Exhibit 9).
Adams, M.D., Kelley, J.M., Gocayne, J.D., Dubnick, M., Polymeropoulos, M.H., Xiao, H., Merril, C.R., Wu, A., Olde, B., Moreno, R.F., Kerlavage, A.R., McCombie, W.R., and Venter, J.C., (1991) Complementary DNA Sequencing: Expressed Sequence Tags and Human Genome Project. Science 252:1651-1656 (Exhibit 10).
Adams, M.D., Dubnick, M., Kerlavage, A.R., Moreno, R., Kelley, J.M., Utterback T.R., Nagle, J.W., Fields, C., and Venter, J.C., (1992) Sequence identification of 2,375 human brain genes. Nature 355:632-634 (Exhibit 11).
Williams, J.G.K., Kubelik, A.R., Livak, K.J., Rafalski, J.A., and Tingey, S.V., (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research 18(22):6531-6535 (Exhibit 12).
Welsh, J., and McClelland, M., (1990) Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Research 18(24): 7213-7218 (Exhibit 13).
Welsh, J., Chada, K., Dalal, S.S., Cheng, R., Ralph, D., and McClelland, M., (1992) Arbitrarily primed PCR fingerprinting of RNA. Nucleic Acids Research 20(19): 4965-4970 (Exhibit 14).
Liang, P., and Pardee, A.B., (1992) Differential Display of Eukaryotic Messen RNA by Means of the Polymerase Chain Reaction. Science 257:967-971 (Exhibit 15) .
Orita, M., Iwahana, H., Kanazawa H., Hayashi, K., and Sekiya, T., (1989) Detection of polymorphisms of human DNA by gel electrophoresis as single-stra conformation polymorphisms. Proc. Natl. Acad. Sci. USA 86:2766-2770 (Exhibit 16).
Orita, M., Suzuki, Y., Sekiya, T., and Hayashi, K., (1989) Rapid and Sensitive Detection of Point Mutations and DNA Polymorphisms Using the Polymerase Chain Reaction. Genomics 5:874-879 (Exhibit 17).
Forss-Petter, S., Danielson, P., and Sutcliffe, J.G., (1986) Neuron-Specific Enolase: Complete Structure of Rat mRNA, Multiple Transcriptional Start Sites and Evidence Suggesting Post-Transcriptional Control. Journal of Neuroscience Research 16:141-156 (Exhibit 18).
Travis, G.H., and Sutcliffe, J.G., (1988) Phenol emulsion-enhanced DNA-driven subtractive cDNA cloning: Isolation of low-abundance monkey cortex-specific mRNAs, Proc. Natl. Acad. Sci. 85:1696-1700 (Exhibit 19).
Liang, P., Averboukh, L., and Pardee, A.B., (1993) Distribution and cloning of eukaryotic mRNAs by means of differential display: refinements and optimization. Nucleic Acis Research 21(14): 3269-3275 (Exhibit 20).

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Method for simulataneous identification of differentially expres does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Method for simulataneous identification of differentially expres, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Method for simulataneous identification of differentially expres will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-85659

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.