Method for producing novel DNA sequences with biological activit

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Patent

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

435 911, 4351723, 4351721, 536 231, 536 241, C12Q 168, C12N 1511, C12N 1510, C12P 1934

Patent

active

058244697

ABSTRACT:
A method of obtaining an oligonucleotide capable of carrying out a predetermined biological function. A heterogeneous pool of oligonucleotides, x+y+z nucleotides in length, is first generated. Each oligonucleotide has a 5' randomized sequence, x nucleotides in length, a central preselected sequence, y nucleotides in length, and a 3' randomized sequence, z nucleotides in length. The resulting heterogeneous pool contains nucleic acid sequences representing a random sampling of the 4.sup.x+z possible sequences for oligonucleotides of the stated length. A random sampling of the heterogeneous pool of oligonucleotides is introduced into a population of cells that do not exhibit the predetermined biological function. The population of engineered cells is then screened for a subpopulation of cells exhibiting the predetermined biological function. From that subpopulation of cells is isolated an oligonucleotide containing the preselected sequence and capable of carrying out the predetermined biological function.

REFERENCES:
patent: 4725535 (1988-02-01), Sonenshein et al.
patent: 4888286 (1989-12-01), Crea
Research Organics Inc. 1984/85 Catalog, p. 18, 1984.
Childs et al. "Ribosome binding site sequences and function" BIOSIS Accession No. 86:249656, 1986.
Bachman, Barbara J., "Linkage Map of Escherichia coli K-12 Edition 7," Escherichia coli and Salmonella typhimurium, American Society of Microbiology 2:807-876, 1987.
Vinopal, R.T., "Selectable Phenotypes," Escherichia coli and Salmonella typhimimurium, American Society of Microbiology, 2:990-1015, 1987.
Black, Margaret E. and Loeb, Lawrence A., "Identification of Important Residues within the Putative Nucleoside Binding Site of HSV-1 Thymidine Kinase by Random Sequence Selection: Mutants in Vitro," Biochemistry 32(43):11618-11626, 1993.
Dube, Dipak et al., "The Association of Thymidine Kinase Activity and Thymidine Transport in Escherichia coli," Gene 99:25-29, 1990.
Dube, Dipak et al., "Artificial Mutants Generated by the Insertion of Random Oligonucleotides into the Putative Nucleoside Binding Site of the HSV-1 Thymidine Kinase Gene," Biochemistry 50(3): 11760-11767, 1991.
Horwitz, Marshall S.Z. and Loeb, Lawrence A. "Promoters selected From Random DNA Sequences," Proc. Natl. Acad. Sci., USA 83(19):7405-7409, 1986.
Horwitz, Marshall S.Z. and Loeb, Lawrence A., "DNA Sequences of Random Origin as Probes of Escherichia coli Promoter Architecture," Journal of Biological Chemistry 263(29):14724-14731, 1988.
Dube, Dipak K. and Loeb, Lawrence A., "Mutants Generated by the Insertion of Random Oligonucleotides into the Active Site of the .beta.-Lactamase Gene," Biochemistry 28(14):5703-5707, 1989.
Horwitz, Marshall S.Z. et al., "Selection of New Biological Activities From Random nucleotide Sequences: Evolutionary and Practical Considerations," Genome 31(1):112-117, 1988.
Hanahan, Douglas, "Studies on Transformation of Escherichia coli with Plasmids," J. Mol. Biol. 166(4):557-580, 1983.
Sanger, F. et al., "DNA sequencing with chain-terminating inhibitors," Proc. Natl. Acad. Sci. USA 74(12):5463-5467, 1977.
Munir, K.M. et al., Thymidine kinase mutants obtained by random sequence selection, Proc. Natl. Acad. Sci. USA 90(9):4012-4016, 1993.
Munir, K.M. et al., "Herpes thymidine kinase mutants with altered catalytic efficiencies obtained by random sequence selection," Protein Engineering 7(1):83-89, 1994.
Smith, J. M., Natural selection and the concept of a protein space, Nature 225:563-564, 1970.
Hopwood, D.A., Methods in Microbiology 3:363-433, 1970.
Davis, B. D., et al., Microbiology, pp. 182-183, Harper & Row, Hagerstown, MD, 1973.
Hall, A., and J. R. Knowles, Directed selected pressure on a .beta.-lactamase to analyze molecular changes involved in development of enzyme function, Nature 264:803-804, 1976.
West, Jr. R. W., et al., Construction and characterization of E. coli promoter-probe plasmid vectors. I. Cloning of promoter-containing DNA fragments, Gene 7271-288, 1979.
Koshland, D., and D. Botstein, Secretion of beta-lactamase requires the carboxy end of the protein, Cell 20;749-760, 1980.
Shortle, D., et al., Segment-direct mutagenesis: construction in vitro of point mutations limited to a small predetermined region of a circular DNA molecule, Proc. Natl. Acad. Sci. USA 77(9):5375-5379, 1980.
Old, R. W., and S. B. Primrose, Principles of Gene Manipulation: an introduction to Genetic Engineering, in Studies in Microbiology vol. 2, pp. 93-94, 112-113, and 119-130, University of California Press, Berkeley, CA 1981.
Dalbie-McFarland, G., et al., Oligonucleotide-directed mutagenesis as a general and powerful method for studies of protein function, Proc. Natl. Acad. Sci. USA 79:6409-6413, 1982.
Maniatis, T. et al., Molecular Cloning: a Laboratory Manual, pp. 11-17, Cold Spring Harbor Laboratory, 1982.
Shortle, D., et al., Gap misrepair mutagenesis: efficient site-directed induction of transition, transversion, and frameshift mutations in vitro, Proc. Natl. Acad. Sci. USA 79:1588-1592, 1982.
Matteucci, M. D., and H. L. Heyneker, Targeted random mutagenesis: the use of ambiguously synthesized oligonucleotdies to mutagenize sequences immediately 5' of an ATG initiation codon, Nucleic Acids Res. 11(10):3113-3121, 1983.
Brosius, J., Plasmid vectors for the selection of promoters, Gene 27:151-160, 1984.
Geysen, H. M., et al., Use of peptide synthesis to probe viral antigens for epitopes to a resolution of a single amino acid, Proc. Natl. Acad. Sci. USA 81:3998-4002, Jul. 1984.
Alberts, B., et al., Antibodies and other macromolecules can be injected into living cells, in Molecular Biology of the Cell, p. 184, Garland Publishing, Inc., New York, NY, 1985.
Barany, F., Two-codon insertion mutgenesis of plasmid genes by using single-stranded hexameric oligonucleotides, Proc. Natl. Acad. Sic. USA 82:4202-4206, Jun. 1985.
Bostein, D., and D. Shortle, Strategies and applications of in vitro mutagenesis, Science 229(4719):1193-1201, Sep. 1985.
Buell, G., et al. Optimizing the expression in E. coli of a synthetic gene encoding somatomedin-C (IGF), Nucleic Acids Res. 13(6):1923-1938, 1985.
Craik, C. S. Use of oligonucleotides for site-specific mutagenesis, BioTechniques, pp. 12-19, Jan./Feb. 1985.
Geysen, H. M., et al., Small peptides induce antibodies with a sequence and structural requirement for binding antigen comparable to antibodies raised against the native protein, Proc. Natl. Acad. Sci. USA 82:178-182, Jan. 1985.
von Heijne, G., Signal sequences: the limits of variation, J. Mol. Biol. 184:99-105, 1985.
Hoffman, C. S., and A. Wright, Fusions of secreted proteins to alkaline phosphatase: an approach for studying protein secretion, Proc. Natl. Acad. Sci. USA 82:5107-5111, Aug. 1985.
McClure, W. R. Mechanism and control of transcription initiation in prokaryotes, Ann. Rev. Biochem. 54;171-204, 1985.
NcNeil, J. B., and M. Smith, Saccharomyces cerevisiae CYCI mRNA 5'-end positioning: analysis by in vitro mutagenesis, using synthetic duplexes with random mismatch base pairs, Molecular and Cellular Biology 5(12):3545-3551, Dec. 1985.
Geysen, H. M. et al., The delineation of peptides able to mimic assembled epitopes, in Synthetic peptides as antigens, Ciba Foundation Symposium 119, Wiley, Chichester, pp. 130-149, 1986.
Hill, D. E., et al., Saturation mutagenesis of the yeast his3 regulatory site: requirements for transcriptional induction and for binding by GNC4 activator protein, Science 234:451-457, Oct. 1986.
Childs, J. D., et al., Corrolating ribosome binding site sequences with function, J. Cellular Biochem. Sup. 913, p. 210, Abstract 0960, 1985.
Childs, J. D., et al., Ribosome binding site sequences and function, UCLA Smp. Mol. Biol. 30:341-350, 1985.
Kozak, M., Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes, Cell 44:283-292, Jan. 1986.
Hutchinson III, C. A., et al., A complete library of point mutations in the glucocorticoid response element of mouse mammary tumor virus, Proc. Natl, Acad. Sci. USA 83:710-714, Feb. 1986.
Schultz, S. C., and J. H. Richards, Site-saturation studies of .

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Method for producing novel DNA sequences with biological activit does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Method for producing novel DNA sequences with biological activit, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Method for producing novel DNA sequences with biological activit will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-242839

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.