Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid
Reexamination Certificate
2011-07-26
2011-07-26
Horlick, Kenneth R. (Department: 1637)
Chemistry: molecular biology and microbiology
Measuring or testing process involving enzymes or...
Involving nucleic acid
C536S023400
Reexamination Certificate
active
07985553
ABSTRACT:
The invention provides methods and compositions for isolation and assessment of riboprotein complexes.
REFERENCES:
patent: 5075227 (1991-12-01), Hagen
patent: 5795723 (1998-08-01), Tapscott et al.
patent: 6110711 (2000-08-01), Serafini et al.
patent: 6130090 (2000-10-01), Heintz et al.
patent: 6143566 (2000-11-01), Heintz et al.
patent: 6156574 (2000-12-01), Heintz et al.
patent: 6252130 (2001-06-01), Federoff
patent: 6270969 (2001-08-01), Hartley et al.
patent: 6403374 (2002-06-01), Tsien et al.
patent: 6410317 (2002-06-01), Farmer
patent: 6441269 (2002-08-01), Serafini et al.
patent: 6485912 (2002-11-01), Heintz et al.
patent: 6495318 (2002-12-01), Harney
patent: 6635422 (2003-10-01), Keene et al.
patent: 6821759 (2004-11-01), Heintz et al.
patent: 7098031 (2006-08-01), Choulika et al.
patent: 7297482 (2007-11-01), Anderson et al.
patent: 7393632 (2008-07-01), Cheo et al.
patent: 2003/0119104 (2003-06-01), Perkins et al.
patent: 2004/0023256 (2004-02-01), Puglisi et al.
patent: 1132479 (2001-09-01), None
patent: WO 0148480 (2001-07-01), None
patent: WO 0158954 (2001-08-01), None
patent: WO 02/647479 (2002-08-01), None
Das et al. Functional association of U2 snRNP with the ATP—dependent spliceosomal complex E. Molecular Cell. (2000) 5: 779-787.
Sano et al. Streptavidin-containing chimeric proteins: design and production. Methods in Enzymology (2000) 326: 305-311.
Ceman et al. Isolation of an FMRP—associated messenger ribonucleoprotein particle and identification of nucleolin and the fragile X-related proteins as components of the complex. Molecular and Cellular Biology (1999) 19(12): 7925-7932.
Tenenbaum et al. Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays. Proceedings of the National Academy of Sciences, USA (2000) 97(26): 14085-14090.
Kalapos et al. Identification of ribosomal protein S1 as a poly(A) binding protein inEscherichia coli. Biochimie (1997) 79: 493-502.
Gimautdinova et al. The proteins of the messenger RNA binding site ofEscherichia coliribosomes. Nucleic Acids Research (1981) 9(14): 3465-3481.
Brodersen et al. The social life of ribosomal proteins. The FEBS Journal (2005) 272: 2098-2108.
Wilson et al. Ribosomal proteins in the spotlight. Critical Reviews in Biochemistry and Molecular Biology (2005) 40: 243-267.
Lin et al. The Primary Structuroef Rat LiverR ibosomal Protein L37. The Journal of Biological Chemistry (1983) 258(17): 10664-10671.
Zong et al. Messenger RNA translation state: The second dimension of high-throughput expression screening. Proceedings of the National Academy of Sciences, USA (1999) 96: 10632-1063.
Broude et al. Proteins of the 30-S Subunit ofEscherichia coliRibosomes which Interact Directly with Natural mRNA. European Journal of Biochemistry (1983) 132: 139-145.
Agafonov et al. Proteins on ribosome surface: Measurements of protein exposure by hot tritium bombardment technique. Proceedings of the National Academy of Sciences, USA (1997) 94: 12892-12897.
Christopher et al. Implications of N and C-Terminal Proximity for Protein Folding. Journal of Molecular Biology (1996) 257: 175-187.
Walles-Granberg et al. Biochimica et Biophysica Acta (2001) 1544: 378-385.
Antic, et al. ELAV tumor antigen, Hel-N1, increases translation of neurofilament M mRNA and induces formation of neurites in human teratocarcinoma cells. Genes Dev. Feb. 15, 1999;13(4):449-461.
Chu, et al. Identification of a thymidylate synthase ribonucleoprotein complex in human colon cancer cells. Mol Cell Biol. Jan. 1994;14(1):207-213.
Heller, et al. Discovery and analysis of inflammatory disease-related genes using cDNA microarrays. Proc Natl Acad Sci U S A. Mar. 18, 1997;94(6):2150-2155.
Schena, et al. Parallel human genome analysis: microarray-based expression monitoring of 1000 genes. Proc Natl Acad Sci U S A. Oct. 1, 1996;93(20):10614-10619.
Anthony, et al. Cre-ating somatic cell genetic mosaics in the mouse. Cell. May 6, 2005;121(3):322-3.
Ashiya, et al. A neuron-specific splicing switch mediated by an array of pre-mRNA repressor sites: evidence of a regulatory role for the polypyrimidine tract binding protein and a brain-specific PTB counterpart. RNA. Sep. 1997;3(9):996-1015.
Buskila, et al. Serum monoclonal antibodies derived from patients with multiple myeloma react with mycobacterial phosphoinositides and nuclear antigens. Clin Exp Immunol. Jun. 1989;76(3):378-83.
Chu, et al. Identification of in vivo target RNA sequences bound by thymidylate synthase. Nucleic Acids Res. Aug. 15, 1996;24(16):3222-8.
Doyle, et al. Application of a translational profiling approach for the comparative analysis of CNS cell types. Cell. 2008;doi:10.1016/j.cell.2008.10.029.
Fisher, et al. Pulse labeling of small nuclear ribonucleoproteins in vivo reveals distinct patterns of antigen recognition by human autoimmune antibodies. Proc Natl Acad Sci U S A. May 1984;81(10):3185-9.
Fredrick, et al. Tagging ribosomal protein S7 allows rapid identification of mutants defective in assembly and function of 30 S subunits. J Mol Biol. May 5, 2000;298(3):379-94.
Gong, et al. A gene expression atlas of the central nervous system based on bacterial artificial chromosomes. Nature. Oct. 30, 2003;425(6961):917-25.
Gong, et al. Highly efficient modification of bacterial artificial chromosomes (BACs) using novel shuttle vectors containing the R6Kgamma origin of replication. Genome Res. Dec. 2002;12(12):1992-8.
Gong, et al. Targeting Cre recombinase to specific neuron populations with bacterial artificial chromosome constructs. J Neurosci. Sep. 12, 2007;27(37):9817-23.
Heiman, et al. A translational profiling approach for the molecular characterization of CNS cell types. Cell. 2008;dok:10.1016/j.cell.2008.10.028.
Heintz, N. Analysis of mammalian central nervous system gene expression and function using bacterial artificial chromosome-mediated transgenesis. Hum Mol Genet. Apr. 12, 2000;9(6):937-43.
Heintz, N. BAC to the future: the use of bac transgenic mice for neuroscience research. Nat Rev Neurosci. Dec. 2001;2(12):861-70.
Heintz, N. Gene expression nervous system atlas (GENSAT). Nature Neuroscience. 2004; 7(5):483.
Liang, et al. An estrogen-dependent polysomal protein binds to the 5′ untranslated region of the chicken vitellogenin mRNA. Nucleic Acids Res. May 11, 1991;19(9):2289-94.
Misulovin, et al. A rapid method for targeted modification and screening of recombinant bacterial artificial chromosome. J Immunol Methods. Nov. 1, 2001;257(1-2):99-105.
Peng, et al. RNA stabilization by the AU—rich element binding protein, HuR, an ELAV protein. EMBO J. Jun. 15, 1998;17(12):3461-70.
Roche, et al. SsrA—mediated peptide tagging caused by rare codons and tRNA scarcity. EMBO J. Aug. 16, 1999;18(16):4579-89.
Trifillis, et al. Finding the right RNA: identification of cellular mRNA substrates for RNA—binding proteins. RNA. Aug. 1999;5(8):1071-82.
Yang, et al. Homologous recombination based modification inEscherichia coliand germline transmission in transgenic mice of a bacterial artificial chromosome. Nat Biotechnol. Sep. 1997;15(9):859-65.
Rusk, N. Targeted translational profiling. Nature Methods. 2009; 6(1):7.
De Jonge et al., “Transcriptional profile of the human peripheral nervous system by serial analysis of gene expression,” Genomics 82(2):97-108, 2003.
Gonzalo and Reboud, “The puzzling lateral flexible stalk of the ribosome,” Biol Cell 95(3-4):179-93, 2003.
Lerner and Steitz, “Antibodies to small nuclear RNAs complexed with proteins are produced by patients with systemic lupus erythematosus,” Proc Natl Acad Sci U S A 76(11):5495-9, 1979.
Nevskaya et al., “Ribosomal protein L1 recognizes the same specific structural motif in its target sites on the autoregulatory mRNA and 23S rRNA,” Nucleic Acids Res 33(2):478-85, 2005.
Noain et al., “Identification of brain neurons expressing the dopamine D4 receptor gene using BAC transgenic mice,” Eur J Neurosci 24(9):2429-38, 2006.
Remacha et al., “Proteins P1, P2, and P0, components of the eukaryotic ribosome stalk. New st
Heintz Nathaniel
Serafini Tito A.
Shyjan Andrew W.
Bertagna Angela
Heintz Nathaniel
Horlick Kenneth R.
Wilson Sonsini Goodrich & Rosati
LandOfFree
Method for isolating cell type-specific mRNAs does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with Method for isolating cell type-specific mRNAs, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Method for isolating cell type-specific mRNAs will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-2711126