Method for isolating and recovering target DNA or RNA...

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C435S091100, C536S023100, C536S024300, C536S024330, C536S025300

Reexamination Certificate

active

06875568

ABSTRACT:
The invention generally concerns the use of amino acid denaturants for denaturing or separating double stranded nucleic acid molecules. More specifically, the present invention provides a method for the rapid isolation and recovery of a desired target DNA or RNA molecules from a mixture or library containing such molecules. The method involves the use of haptenylated probes and amino acid denaturants to select the desired molecules and eliminate the undesired library members from a sample. The invention also provides a method in which larger or full-length nucleic acid molecules can be isolated from the subpopulation of desired molecules.

REFERENCES:
patent: 4683202 (1987-07-01), Mullis
patent: 4767699 (1988-08-01), Vary et al.
patent: 4800159 (1989-01-01), Mullis et al.
patent: 5165925 (1992-11-01), Leong
patent: 5187085 (1993-02-01), Lee
patent: 5350672 (1994-09-01), Oberst et al.
patent: 5484702 (1996-01-01), Ludwig
patent: 5500356 (1996-03-01), Li et al.
patent: 5545540 (1996-08-01), Mian
patent: 5650167 (1997-07-01), Allison
patent: 5719023 (1998-02-01), Zarling et al.
patent: 5759778 (1998-06-01), Li et al.
patent: 5871929 (1999-02-01), Barnes
patent: 6013488 (2000-01-01), Hayashizaki
patent: 6268133 (2001-07-01), Nisson et al.
patent: 44 11 588 (1995-09-01), None
patent: 44 11 594 (1995-12-01), None
patent: 773 225 (1997-05-01), None
patent: 0 773 225 (1997-05-01), None
patent: 0 821 059 (1998-01-01), None
patent: 2 733 515 (1996-10-01), None
patent: WO 9509915 (1995-04-01), None
patent: WO 9520682 (1995-08-01), None
patent: WO 9720918 (1997-06-01), None
Mitchell et al., Affinity generation of single-stranded DNA for dideoxy sequencing following the polymerase chain reaction. Anal. Biochem., 178, 239-242, 1989.*
Inman et al., Partial denaturation of thymine- and 5-bromouracil-containing lambda DNA in alkali. J. Mol. Biol., 49, 93-98, 1970.*
Liquier et al., Infrared linear dichroism investigations of deoxyribonucleic acid complexes with poly(l-arginine) and poly(-lysine). Biochemistry, 14, 4191-4197, 1975.*
Freifelder, Physical Biochemistry: Applications to Biochemistry and Molecular Biology, second edition, pp. 508-510, 1982. Published by W.h. Freeman and company, San Francisco.*
Yoshida, Mg2+, Ca2+-dependent unwinding of DNA by poly-L-glutamic acid. Biochem. Biophys. Res. Commun., 116, 217-221, 1983.*
Smol'yaninova, T.I., et al., “Model Studies of DNA-Protein Interactions. I. Effect of Aminocarboxylic and Amide Groups of Amino Acids on the Thermostability and Conformation of DNA,”Molekulyarnaya Biologiya19:992-1000, Maik Nauka/Interperiodica Publishing (1985).
Aslanyan, V.M. et al., “Conformation and Thermal Stability of DNA in Aqueous Solutions of β-Alanine and γ-Aminobutyric Acid,”Biophysics29:615-620, Pergamon Press Ltd. (1984).
Baskaran, N. et al., “Uniform Amplification of a Mixture of Deoxyribonucleic Acids with Varying GC Content,”Genome Res.6:633-638, Cold Spring Harbor Laboratory Press (Jul. 1996).
Buche, A. et al., “Organic Osmotic Effectors and Chromatin Structure,”J. Biomol. Struct.&Dynam.8:601-618, Adenine Press (1990).
Buche, A. et al., “Glycine and other amino compounds prevent chromatin precipitation at physiological ionic strength,” FEBS Lett. 247:367-370, Federation of European Biochemical Societies and Elsevier Science Publishers B.V. (Biomedical Division) (1989).
Buche, A. et al., “Effect of Organic Effectors on Chromatin Solubility, DNA-Histone H1 Interactions, DNA and Histone H1 Structures,”J. Biomol. Struct.&Dynam.11:95-119, Adenine Press (1993).
Cánovas, D. et al., “Osmoprotectants inHalomonas elongata: High-Affinity Betaine Transport System and Choline-Betaine Pathway,”J. Bacteriol.178:7221-7226, American Society for Microbiology (Dec. 1996).
Cánovas, D. et al., “Isolation and Characterization of Salt-sensitive Mutants of the Moderate HalophileHalomonas elongataand Cloning of the Ectoine Synthesis Genes,”J. Biol. Chem.272:25794-25801, The American Society for Biochemistry and Molecular Biology, Inc. (Oct. 1997).
Carninci, P. et al., “Thermostabilization and thermoactivation of thermolabile enzymes by trehalose and its application for the synthesis of full length cDNA,”Proc. Natl. Acad. Sci. USA95:520-524, The National Academy of Sciences (Jan. 1998).
Chambers, S.T. et al., “Dimethylthetin Can Substitute for Glycine Betaine as an Osmoprotectant Molecule forEscherichia coli,”J. Bacteriol.169:4845-4847, American Society for Microbiology (1987).
Flock, S. et al., “Osmotic Effectors and DNA Structure: Effect of Glycine on Precipitation of DNA by Multivalent Cations.”J. Biomol. Struct.&Dynam.13:87-102, Adenine Press (1995).
Flock, S. et al., “Dielectric Constant and Ionic Strength Effects on DNA Precipitation,”Biophys. J.70:1456-1465, Biophysical Society (Mar. 1996).
Flock, S. et al., “23Na NMR Study of the Effect of Organic Osmolytes on DNA Counterion Atmosphere,”Biophys. J.71:1519-1529, Biophysical Society (Sep. 1996).
Frackman, S. et al., “Betaine and DMSO: Enhancing Agents for PCR,”Promega Notes65:27-29, Promega Corporation (Feb. 1998).
Gouesbet, G. et al., “Characterization of theErwinia chrysanthemiOsmoprotectant Transporter Gene ousA,”J. Bacteriol.178:447-455, American Society for Microbiology (Jan. 1996).
Hengen, P.N., “Optimizing multiplex and LA-PCR with betaine,”Trends Biochem. Sci.22:225-226, Elsevier Science Ltd. (Jun. 1997).
Henke, W. et al., “Betaine improves the PCR amplification of GC-rich DNA sequences,”Nucl. Acids Res.25:3957-3958, Oxford University Press (Oct. 1997).
Hogrefe, H. et al., “Novel PCR Enhancing Factor Improves Performance of Pfu DNA Polymerase,”Stratagene Strategies10:93-96, Stratagene (Aug. 1997).
Houssier, C. et al., “Effects of Compensatory Solutes on DNA and Chromatin Structural Organization in Solution,”Comp. Biochem. Physiol.117A:313-318, Elsevier Science Inc. (Jul. 1997).
Iakobashvili, R. and Lapidot, A., “Low temperature cycled PCR protocol for Klenow fragment of DNA polymerase I in the presence of proline,”Nucl. Acids Res.27: 1566-1568, Oxford University Press (Mar. 1999).
Jakob, R. and Saenger, W., “Reversed-phase ion-pair chromatographic separation of ribulose 1,5-bisphosphate from 3-phosphoglycerate and its application as a new enzyme assay for RuBP carboxylase/oxygenase,”FEBS Lett.183:111-114, Elsevier Science Publishers B.V. (Biomedical Divion) (1985).
Kondakova, N.V. et al., “Effect of Low-molecular Amines on DNA Conformation and Stability of Double Helix,”Molekulyarnaya Biologiya9:742-745, Maik Nauka/Interperiodica Publishing (1975).
English Language Translation for Document AS8, Kondakova, N.V. et al., “Effect of Low molecular Amines on the Conformation and Stability of the DNA Double Helix,”Molekulyarnaya Biologiya9:742-746, Plenum Publishing Corporation (1975).
Landre, P.A. et al., “The Use of Cosolvents to Enhance Amplification by the Polymerase Chain Reaction,” inPCR Strategies, Innis, M.A. et al., eds., Academic Press, Inc., San Diego, California, pp. 3-16 (1995).
Le Rudulier, D. et al., “Molecular Biology of Osmoregulation,”Science224:1064-1068, American Association for the Advancement of Science (1984).
Li, C.-J. et al., “Nonprotein Amino Acids from Seeds ofCycas circinalisandPhaseolus vulgaris,” Phytochem.42:443-445, Elsevier Science Ltd. (May 1996).
Malin, G. and Lapidot, A., “Induction of Synthesis of Tetrahydropyrimidine Derivatives inStreptomycesStrains and Their Effect onEscherichia coliin Response to Osmotic and Heat Stress,”J. Bacteriol.178:385-395, American Society for Microbiology (Jan. 1996).
Marquet, R. and Houssier, C., “Thermodynamics of Cation-Induced DNA Condensation,”J. Biomol. Struct.&Dynam.9:159-167, Adenine Press (1991).
Mytelka, D.S. and Chamberli

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Method for isolating and recovering target DNA or RNA... does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Method for isolating and recovering target DNA or RNA..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Method for isolating and recovering target DNA or RNA... will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-3397407

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.