Method for isolating a polynucleotide of interest from the...

Organic compounds -- part of the class 532-570 series – Organic compounds – Carbohydrates or derivatives

Reexamination Certificate

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C536S023700, C536S024300, C536S024320

Reexamination Certificate

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07112663

ABSTRACT:
A method for isolating a polynucleotide of interest that is present in the genome of a first mycobacterium strain and/or is expressed by the first mycobacterium strain, where the polynucleotide of interest is also absent or altered in the genome of a second mycobacterium strain and/or is not expressed in the second mycobacterium. The method includes (a) contacting the genomic DNA of the first mycobacterium strain under hybridizing conditions with the DNA of a least one clone that belongs to a bacterial artificial chromosome (BAC) genomic DNA library of the second mycobacterium strain, and (b) isolating the polynucleotide of interest that does not form a hybrid with the DNA of the second mycobacterium strain. This invention further pertains to aMycobacterium tuberculosisstrain H37Rv genomic DNA library, as well as aMycobacterium bovisBCG strain Pasteur genomic DNA library, and the recombinant BAC vectors that belong to those genomic DNA libraries. This invention also relates to mycobacterial nucleic acids, and methods and kits for using these nucleic acids to detect mycobacteria in a biological sample.

REFERENCES:
patent: 5474796 (1995-12-01), Brennan
patent: 6183957 (2001-02-01), Cole et al.
patent: WO93/03187 (1993-02-01), None
patent: WO93/18186 (1993-09-01), None
patent: WO 9723624 (1997-07-01), None
Genbank Accession No. AD000001; Dec. 1996.
Blast alignment between Seq ID Nos. 1 and GI 1702974 (Genbank Accession No. AD000001); 1996.
Brosch et al., “Use of aMycobacterium tuberculosisH37Rv Bacterial Aritificial Chromosome Library for Genome Mapping Sequencing, and Comparative Genomics,”Infection and Immunity, vol. 66, No. 5, pp. 2221-2229 (May 1998).
Cole et al., “Deciphering the Biology ofMycobacterium tuberculosisfrom the Complete Genome Sequence,”Nature, vol. 393, pp. 537-544 (Jun. 11, 1998).
Cole et al., “Analysis of the Genome ofMycobacterium tuberculosisH37Rv”, Novartis Foundation Symposium, pp. 160-177 (1998).
Kim et al., “Construction and Characterization of a Human Bacterial Artificial Chromosome Library,”Genomics, vol. 34, pp. 213-218 (Jun. 1, 1996).
Philipp et al., “Physical Mapping ofMycobacterium bovisBCG Pasteur Reveals Differences from the Genome Map ofMycobacterium tuberculosisH37Rv and fromM. bovis,”P.N.A.S.,vol. 142:3135-3145 (1996).
Philipp et al., “An Integrated Map of the Genome of the Tubercle Bacillus,Mycobacterium tuberculosisH37Rv, and Comparison withMycobacterium leprae,” Microbiology,vol. 93:3132-3137 (1996).
Zimmer et al., “Construction and Characterization of Large-Fragmented Chicken Bacterial Artificial Chromosome Library”,Genomics,vol. 42:217-226 (1997).
International Search Report of PCT/IB99/00740.
U.S. Appl. No. 09/060,756 and 09/670,314 (same disclosure).
GenEmbl AD00001.
GenEmbl AD000017.
GenEmbl U00013.
GemEmbl X63508 (Nov. 20, 1996).
GenBank Z79701[gi:1524225](submitted Sep. 2, 1996; posted Sep. 6, 1996; replaced Jun. 27, 1998) (23 pages).
GenBank Z79701 Revision history (1page).

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