Method for identifying the elution time of an analyte

Chemistry: analytical and immunological testing – Including chromatography

Reexamination Certificate

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C436S086000, C702S019000, C702S001000

Reexamination Certificate

active

07897405

ABSTRACT:
A method for determining a time of elution of a peptide of interest from a liquid chromatography column includes a step of obtaining chromatographic data for each of a plurality of candidate fragment ions of the peptide of interest. A time along a common chromatographic time is scale determined corresponding to maximum overlay of the ion signals measured for each of the plurality of candidate fragment ions. Finally, the determined time is assigned as the time of elution of the peptide of interest from the liquid chromatography column. In particular, the chromatographic data is acquired during selective reaction monitoring of an eluate from the liquid chromatography column containing the peptide of interest. The chromatographic data includes ion signals measured along the common chromatographic time scale for each of the plurality of candidate fragment ions.

REFERENCES:
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patent: 2005/0288872 (2005-12-01), Old et al.
patent: 2007/0218505 (2007-09-01), Kearney
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patent: 1 626 274 (2006-02-01), None
patent: WO 2005/114930 (2005-12-01), None
patent: WO 2007/044935 (2007-04-01), None
Nielsen N. et al., Aligning of single and multiple wavelength chromatographic profiles for chemometric data analysis using correlation optimised warping, 1998, Journal of Chromatography A, 805, pp. 17-35.
Strittmatter et al., “Application of Peptide LC Retention Time Information in a Discriminant Function for Peptide Identification by Tandem Mass Spectrometry,” Journal of Proteome Research, Pacific Northwest National Laboratory (Richland, WA), vol. 3 (4), pp. 760-769, (2004).

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