Method for distinguishing different-sequence polynucleotides

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

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C435S091100, C435S091200

Reexamination Certificate

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07129050

ABSTRACT:
Method and composition for detecting one or more selected polynucleotide regions in a target polynucleotide. In the method, a mixture of sequence-specific probes are reacted with the target polynucleotide under hybridization conditions, and the hybridized probes are treated to selectively modify those probes which are bound to the target polynucleotide in a base-specific manner. The resulting labeled probes include a polymer chain which imparts to each different-sequence probe, a distinctive ratio of charge/translational frictional drag, and a detectable label. The labeled probes are fractionated by electrophoresis in a non-sieving matrix, and the presence of one or more selected sequences in the target polynucleotide are detected according to the observed electrophoretic migration rates of the labeled probes in a non-sieving medium.

REFERENCES:
patent: 4683202 (1987-07-01), Mullis
patent: 4879214 (1989-11-01), Kornher et al.
patent: 4883750 (1989-11-01), Whiteley et al.
patent: 4925785 (1990-05-01), Wang et al.
patent: 5011769 (1991-04-01), Duck et al.
patent: 5061361 (1991-10-01), Gordon
patent: 5093232 (1992-03-01), Urdea et al.
patent: 5108568 (1992-04-01), Van Alstine
patent: 5171534 (1992-12-01), Smith et al.
patent: 5470705 (1995-11-01), Grossman et al.
patent: 5514543 (1996-05-01), Grossman et al.
patent: 5580732 (1996-12-01), Grossman et al.
patent: 5624800 (1997-04-01), Grossman et al.
patent: 5777096 (1998-07-01), Grossman et al.
patent: 5807682 (1998-09-01), Grossman et al.
patent: 6756204 (2004-06-01), Grossman et al.
patent: WO 92/08728 (1992-05-01), None
Agrawal, S. et al., “Site-Specific Functionalization of Oligodeoxynucleotides for Non-Radioactive Labeling,”Tetrahedron Letters, 31(11):1543-1546 (1990).
Barany, F., “Genetic Disease Detection and DNA Amplification Using Cloned Thermostable Ligase,”Proc. Natl. Acad. Sci. USA, 88:189-193 (1991).
Chen et al., “Low-Cost, High-Sensitivity Laser-Induced Fluorescence Detection for DNA Sequencing by Capillary Gel Electrophoresis,”J. Chrom., 559:237-246 (1991).
Cload, S. et al., “Polyether Tethered Oligonucleotide Probes,”J. Am. Chem. Soc., 113: 6324 (1991).
Cohen, A. et al., “High-Performance Capillary Electrophoretic Separation of Bases, Nucleosides, and Oligonucleotides: Retention Manipulation via Micellar Solutions and Metal Additives,”Anal. Chem., 59(7):1021-1027 (1987).
Cohen et al., “Rapid Separation and Purification of Oligonucleotides by High-Performance Capillary Gel Electrophoresis,”Proc. Natl. Acad. Sci. USA, 85:9660-9663 (1988).
Connell, C. et al., “Automated DNA Sequence Analysis,”BioTechniques, 5(4): 342-348 (1987).
Cunico, R. et al., “Characterization of Polyethylene Glycol Modified Proteins Using Charge Reversed Capillary Electrophoresis,”J. Chrom., 559:467-477 (1991).
Duck, P. et al., “Probe Amplifier System Based on Chimeric Cycling Oligonucleotides,”BioTechniques, 9(2):142-148 (1990).
Haralambidis, J. et al., “The Synthesis of Polyamide-Oligonucleotide Conjugate Molecules,”Nuc. Acids Res., 18(3):493-499 (1990).
Jorgenson, J. et al., “Capillary Zone Electrophoresis,”Science, 222:266-272 (1983).
Kambara et al., “Real Time Automated Simultaneous Double-Stranded DNA Sequencing USing Two-Color Fluorophore Labeling,”BioTechnology, 9:648-651 (1991).
Karger et al., “Multiwavelength Fluorescence Detection for DNA Sequencing Using Capillary Electrophoresis,”Nuc. Acids Res., 19(18):4955-4962 (1991).
Komher J., “Mutation Detection Using Nucleotide Analogs that Alter Electrophoretic Mobility,”Nuc. Acids Res, 17(19): 7779-7784 (1989).
Landegren, U. et al., “A Ligase-Mediated Gene Detection Technique,”Science, 241:1077-1080 (1988).
Livak, K. et al., “Detection of Single Base Differences Using Biotinylated Nucleotides with Very Long Linker Arms,”Nuc. Acids Res., 20(18):4831-4837 (1992).
Mayer, P. et al., “Theory of DNA Sequencing Using Free Solution Electrophoresis of Protein-DNA Complexes,”Analytical Chem., 66:1777-1780 (1994).
Müller, W. et al., “Polyethylene Glycol Derivatives of Base and Sequence Specific DNA Ligands: DNA Interaction and Application for Base Specific Separation of DNA Fragments by Gel Electrophoresis,”Nuc. Acids Res., 9(1):95-119 (1981).
Nathakarkitkool, S. et al., “High-Resolution Capillary Electrophoretic Analysis of DNA in Free Solution,”Electrophoresis, 13:18-31 (1992).
Noolandi, J., “A New Concept for Sequencing DNA by Capillary Electrophoresis,”Electrophoresis, 13: 394-395 (1992).
Prober, J. et al., “A System for Rapid DNA Sequencing with Flourescent Chain-Terminating Dideoxynucleotides,”Science, 238:336-341 (1987).
Righetti, P., “Recent Developments in Electrophoretic Methods,”J. Chrom., 516:3-22 (1990).
Saiki, R. et al. “Enzymatic Amplification of β-Globin Genomic Sequences and Restriction Site Analysis for Diagnosis of Sickle-Cell Anemia,”Science, 230:1350-1354 (1985).
Skolnick, M. et al., “Simultaneous Analysis of Multiple Polymorphic Loci Using Amplified Sequence Polymorphisms (ASPs),”Genomics2: 273-279 (1988).
Winn-Deen, E. et al., “Sensitive Flourescence Method for Detecting DNA Ligation Amplification Products,”Clinical Chemistry, 37(9): 1522-1523 (1991).
Wu, D. et al., “Specificity of the Nick-Closing Activity of Bacteriophage T4 DNA Ligase,”Gene, 76: 245-254 (1989).
Wu, D. et al., “The Ligation Amplification Reaction (LAR)-Amplification of Specific DNA Sequences Using Sequential Rounds of Template-Dependent Ligation,”Genomics, 4:560-569 (1989).
“Optimization and Troubleshooting DNA Sequencing with the Model 370A for use with Version 1.20 data analysis software,”Applied Biosystems User Bulletin, 7:1-15 (Apr. 15, 1998).

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