Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid
Patent
1996-11-12
2000-04-11
Jones, W. Gary
Chemistry: molecular biology and microbiology
Measuring or testing process involving enzymes or...
Involving nucleic acid
536 231, 536 243, 935 76, 935 77, 935 78, C12Q 168, C07H 2102, C07H 2104, C12N 1500
Patent
active
060486880
ABSTRACT:
The present invention relates to a method for detecting the presence of P. aeruginosa in a fluid sample. The method uses PCR to amplify the expression of a segment of the exotoxin A gene sequence. The method includes treating strands of nucleotide fragments with a first oligonucleotide primer and a second oligonucleotide primer. The primers are sufficiently complementary to the fragment to hybridize a region having from about 400 to 1200 base pairs. Desirably, the first oligonucleotide primer includes the sequence 5'-ACA ACG CCC TCA GCA TCA CCA-3' and the second oligonucleotide primer includes the sequence 5'-CGG GTC GAG CAG GCA CAA C-3'.
REFERENCES:
patent: 4458066 (1984-07-01), Caruthers et al.
patent: 4683195 (1987-07-01), Mullis et al.
patent: 4683202 (1987-07-01), Mullis
patent: 4711955 (1987-12-01), Ward et al.
patent: 4755458 (1988-07-01), Rabbani et al.
patent: 4780405 (1988-10-01), Kaiser et al.
patent: 4833251 (1989-05-01), Musso et al.
patent: 4910300 (1990-03-01), Urdea et al.
patent: 4965188 (1990-10-01), Mullis et al.
patent: 5035996 (1991-07-01), Hartley
patent: 5084565 (1992-01-01), Parodos et al.
patent: 5130238 (1992-07-01), Malek et al.
patent: 5130446 (1992-07-01), Musso et al.
patent: 5175269 (1992-12-01), Stavrianopoulos
patent: 5217862 (1993-06-01), Barns et al.
patent: 5241060 (1993-08-01), Engelhardt et al.
patent: 5328824 (1994-07-01), Ward et al.
patent: 5348855 (1994-09-01), Dattagupta et al.
patent: 5376528 (1994-12-01), King et al.
patent: 5409818 (1995-04-01), Davey et al.
patent: 5447841 (1995-09-01), Gray et al.
patent: 5447848 (1995-09-01), Barns et al.
patent: 5491224 (1996-02-01), Bittner et al.
patent: 5599665 (1997-02-01), Barbieri et al.
Khan, A.A. and C.E. Cerniglia, "Detection of Pseudomonas Aeruginosafrom Clinical and Environmental Samples by Amplification of the Exotoxin A Gene Using PCR," Applied and Environmental Microbiology, Oct. 1994, pp. 3739-3745.
Viscidi, R. P., et al., "Novel Chemical Method for the Preparation of Nucleic Acids for Nonisotopic Hybridization," Journal of Clinical Microbiology, vol. 23, No. 2 (Feb. 1986), pp. 311-317.
Avignolo, C., et al., "Biotinylation of Double Stranded DNA After Transamination," Biochemical and Biophysical Research Communications, vol. 170, No. 1 (Jul. 1990), pp. 243-250.
Hayatsu, H., "Reaction of Cytidine with Semicarbazide in the Presence of Bisulfite. A Rapid Modification Specific for Single-Stranded Polynucleotide," Biochemistry, vol. 15, No. 12 (1976), pp. 2677-2682.
Draper, D. B., et al., "A Method for Linking Fluorescent Labels to Polynucleotides: Application to Studies of Ribosome-Ribonucleic Acid Interactions," Biochemistry, vol. 19, No. 9 (1980), pp. 1774-1781.
Schulman, L. H., et al., "Attachment of protein affinity-labeling reagents of variable length and amino acid specificity to E. coli tRNA .sup.fMet," Nucleic Acids Research, vol. 9, No. 5 (1981), pp. 1203-1217.
Eshaghpour, H., et al., "Specific chemical labeling of DNA fragments," Nucleic Acids Research, vol. 7 No. 6 (Aug. 1979), pp. 1485-1495.
Yang, C., et al., "Covalent Attachment of Fluorescent Groups to Transfer Ribonucleic Acid Reactions with 4-Bromomethyl-7-methoxy-2-oxo-2H-benzopyran," Biochemistry, vol. 13, No. 17(1974), pp. 3615-3621.
Reines, S. A., et al., "A New Method for Attachment of Fluorescent Probes to tRNA," Methods in Enzymology, vol. LIX, [7], pp. 146-156.
Landegent, J.E., et al., "2-Acetylaminofluorene-modified Probes for the Indirect Hyrbridocytochemical Detection of Specific Nucleic Acid Sequences," Experimental Cell Research, vol. 153 (1984), pp. 61-72.
Hopman, A. H. N., et al., "Bi-color detection of two target DNAs by non-radioative in situ hybridization," Histochemistry, vol. 85,(1986), pp. 1-4.
Nociari et al, Diagnostic Microbiology and Infectious Disease 24 :179-190 (1996).
Gray et al. Cloning, nucleotide sequence, and expression in Escherichia coli of the exotoxin A structural gene of Pseudomonas aeruginosa Proc. Natl. Acad. Sci. USA, vol. 81, pp. 2645-2649, 1984.
Heathcock Sarah Elizabeth
Huard Linda Susan
Korth Kevin Gary
Jones W. Gary
Kimberly-Clark Corporation
Whisenant Ethan
LandOfFree
Method for detection of Pseudomonas aeruginosa using polymerase does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with Method for detection of Pseudomonas aeruginosa using polymerase , we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Method for detection of Pseudomonas aeruginosa using polymerase will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-1175440