Method for characterizing polypeptides

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving hydrolase

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C436S089000

Reexamination Certificate

active

10479843

ABSTRACT:
Provided is a method for characterizing a polypeptide, which method comprises the steps of: (a) optionally reducing cysteine disulphide bridges in the polypeptide to form free thiols, and capping the free thiols; (b) cleaving the polypeptide with a sequence specific cleavage reagent to form peptide fragments; (c) optionally deactivating the cleavage reagent; (d) capping one or more ε-amino groups that are present with a lysine reactive agent; (e) analyzing peptide fragments by mass spectrometry to form a mass fingerprint for the polypeptide; and (f) determining the identity of the polypeptide from the mass fingerprint.

REFERENCES:
patent: 5141474 (1992-08-01), Fujimoto
patent: 5750360 (1998-05-01), Fesus et al.
patent: 6156527 (2000-12-01), Schmidt et al.
patent: 6846679 (2005-01-01), Schmidt et al.
patent: 2005/0042676 (2005-02-01), Hamon et al.
patent: 2005/0042713 (2005-02-01), Thompson et al.
patent: 43 44 425 (1994-06-01), None
patent: 0 333 587 (1989-09-01), None
patent: 0 594 164 (1994-04-01), None
patent: 07-165789 (1995-06-01), None
patent: WO 00/20870 (2000-04-01), None
patent: WO 00/20870 (2000-04-01), None
patent: WO 01/74842 (2001-10-01), None
patent: WO 01/74842 (2001-10-01), None
patent: WO 02/08767 (2002-01-01), None
patent: WO 02/08767 (2002-01-01), None
D.J.C. Pappin et al., “Rapid Identification of Proteins by Peptide-Mass Fingerprinting”; Current Biology, vol. 3, No. 6, pp. 327-332, 1993.
Matthias Mann et al., “Use of Mass Spectrometric Molecular Weight Information to Identify Proteins in Sequence Databases”, Biological Mass Spectrometry, vol. 22, pp. 338-345, 1993.
John R. Yates III et al., “Peptide Mass Maps: A Highly Informative Approach to Protein Identification”, Analytical Biochemistry, vol. 214, pp. 397-408, 1993.
Eberhard Krause et al., “The Dominance of Arginine-Containing Peptides in Maldi-Derived Tryptic Mass Fingerprints of Proteins”, Anal. Chem., vol. 71, pp. 4160-4165, 1999.
Valentina Bonetto et al., “C-Terminal Sequence Determination of Modified Peptides by Maldi MS”, Journal of Protein Chemistry, vol. 16, No. 5 pp. 371-374, 1997.
Francesco L. Brancia et al., “A Combination of Chemical Derivatisation and Improved Bioinformatic Tools Optimises Protein Identification for Proteomics”, Electrophoresis, vol. 22, pp. 552-559, 2001.
Ruth A. VanBogelen et al., “Application of Two-Dimensional Protein Gels in Biotechnology”, Biotechnology Annual Review, vol. 1, pp. 69-103, 1995.
Peter Jungblut et al., “Protein Identification From 2-DE Gels by Maldi Mass Spectrometry”, Mass Spectrometry Reviews, vol. 16, pp. 145-162, 1997.
A. Bagree et al., “Modification of ε-Amino Group of Lysine in Proteins by Acylation with Pyromellitic Dianhydride and o-Sulphobenzoic Anhydride”, Febs Letters, vol. 120, No. 2, pp. 275-277, Nov. 1980.
Enrique Palacian et al., “Dicarboxylic Acid Anhydrides as Dissociating Agents of Protein-Containing Structures”, Molecular and Cellular Biochemistry, vol. 97, pp. 101-111, 1990.
Mendel Friedman et al., “Additive Linear Free-Energy Relationships in Reaction Kinetics of Amino Groups with α,β-Unsaturated Compounds”, Journal of Organic Chemistry, vol. 31, pp. 2888-2894, 1966.
Margherita Morpurgo et al., “Preparation and Characterization of Poly(Ethylene Glycol) Vinyl Sulfone”, Bioconjugate Chem., vol. 7, pp. 363-368, 1996.
Mendel Friedman et al., “Reactions of Proteins with Ethyl Vinyl Sulfone:”, Int. J. Peptide Protein Res., vol. 7, pp. 481-486, 1975.
M. Sid Masri et al., “Protein Reactions With Methyl and Ethyl Vinyl Sulfones”, Journal of Protein Chemistry, vol. 7, No. 1, pp. 49-54, 1988.
Lila Graham et al., “[14C]Acrylonitrile: Preparation Via a Stable Tosylate Intermediate and Quantitative Reaction With Amine Residues in Collagen”, Analytical Biochemistry, vol. 153, pp. 354-358, 1986.
Hermann Esterbauer et al., “Reaction of Glutathione With Conjugated Carbonyls”, Z. Naturforsch. [C], vol. 30, No. 4, pp. 466-473, 1975.
Mark L. Stolowitz et al., “Phenylboronic Acid-Salicyhydroxamic Acid Bioconjugates. 1. A Novel Boronic Acid Complex for Protein Immobilization”, Bioconjugate Chem., vol. 12, pp. 229-239, 2001.
Jean P. Wiley et al., “Phenylboronic Acid-Salicylhydroxamic Acid Bioconjugates. 2. Polyvalent Immobilization of Protein Ligands for Affinity Chromatography”, Bioconjugate Chem., vol. 12, pp. 240-250, 2001.
Nigel S. Simpkins, “Tetrahedron Report No. 282”, Tetrahedron, vol. 46, No. 20, pp. 6951-6984, 1990.
P. L. Fuchs et al., “Multiply Convergent Syntheses via Conjugate-Addition Reactions to Cycloalkenyl Sulfones”, Chem. Rev., vol. 86, pp. 903-917, 1986.
Hiroyasu Tsuge et al., “Regio- and Sterio-Selective Synthesis of Trifluoromethylated Isoxazolidines by 1,3-Dipolar Cycloaddition of 1,1,1-Trifluoro-3-Phenylsulfonylpropene With Nitrones, and Their Conversion Into Trifluoromethylated Syn-3-Amino Alcohols”, J. Chem. Soc. Perkin Trans, vol. 1, pp. 2761-2766, 1995.
Norman E. Sharpless et al., “The Reactions of Amines and Amino Acids With Maleimides. Structure of the Reaction Products Deduced From Infrared and Nuclear Magnetic Resonance Spectroscopy”, Biochemistry, vol. 5, No. 9, pp. 2963-2971, 1966.
A. Papini et al, “Alkylation of Histidine With Maleimido-Compounds”, Int. J. Peptide Protein Res., vol. 39, pp. 348-355, 1992.
M. Niyaz Khan, “Kinetics and Mechanism of the Alkaline Hydrolysis of Maleimide”, Journal of Pharmaceutical Sciences, vol. 73, No. 12, pp. 1767-1771, Dec. 1984.
Peter C. Jocelyn, “[46] Chemical Reduction of Disulfides”, Methods in Enzymology, vol. 143, pp. 246-256, 1987.
L. H. Krull et al., “2-Vinylquinoline, a Reagent to Determine Protein Sulfhydryl Groups Spectrophotometrically”, Analytical Biochemistry, vol. 40, pp. 80-85, 1971.
M. S. Masri et al., “p-Nitrostyrene: New Alkylating Agent for Sulfhydryl Groups in Reduced Soluble Proteins and Keratins”, Biochemical and Biophysical Research Communications, vol. 47, No. 6, pp. 1408-1413, 1972.
Mendel Friedman et al., “Estimation of the Disulfide Content of Trypsin Inhibitors as S-β-(2-Pyridylethyl)-L-Cysteine”, Analytical Biochemistry, vol. 106, pp. 27-34, 1980.
Urs Th. Ruegg et al., “[10] Reductive Cleavage of Cystine Disulfides With Tributylphosphine”, Methods in Enzymology, vol. 47, pp. 111-116, 1977.
John a. Burns et al., “Selective Reduction of Disulfides by Tris(2-Carboxyethyl)Phosphine”, J. Org. Chem., vol. 56, pp. 2648-2650, 1991.
Robert L. Geahlen et al., “A General Method for Preparation of Peptides Biotinylated at the Carboxy Terminus”, Analytical Biochemistry, Vo. 202, pp. 68-70, 1992.
Sesha Natarajan et al., “Site-Specific Biotinylation a Novel Approach and its Application to Endothelin-1 Analogs and Pth-Analog”, Int. J. Peptide Protein Res., vol. 40, pp. 567-574, 1992.
Vishwanath R. Lyer et al., “The Transcriptional Program in the Response of Human Fibroblasts to Serum”, Science, vol. 283, pp. 83-87, Jan. 1, 1999.
Joachim Klose et al., “Two-Dimensional Electrophoresis of Proteins: An Updated Protocol and Implications for a Functional Analysis of the Genome”, Electrophoresis, vol. 16, pp. 1034-1059, 1995.
Craig Gerard “[40] Purification of Glycoproteins”, Methods in Enzymology, vol. 182, pp. 529-539, 1990.
Edward A. Bayer et al., “Biocytin Hydrazide—A Selective Label for Sialic Acids, Galactose, and Other Sugars in Glycoconjugates Using Avidin—Biotin Technology”, Analytical Biochemistry, vol. 170, pp. 271-281, 1988.
Gary E. Means, “[45] Reductive Alkylation of Amino Groups”, Methods Enzymol. vol. 47, pp. 469-478, 1977.
Ivan Rayment, “[12] Reductive Alkylation of Lysine Residues to Alter Crystallization P

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Method for characterizing polypeptides does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Method for characterizing polypeptides, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Method for characterizing polypeptides will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-3787919

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.