Method for amplification and sequencing of nucleic acid polymers

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Patent

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

435 912, C12Q 168, C12P 1934

Patent

active

057891680

ABSTRACT:
Amplification and sequencing of a selected region of a target nucleic acid polymer are be performed in a single vessel. The sample is added to an amplification mixture containing a thermally stable polymerase and nucleoside feedstocks. Chain terminating dideoxynucleosides are added either at the beginning of the amplification reaction or during the course of the amplification. A thermally stable polymerase which incorporates dideoxynucleotides into an extending oligonucleotide at a rate which is no less than about 0.4 times the rate of incorporation of deoxynucleosides can be used in the amplification mixture or added with the chain terminating nucleoside.

REFERENCES:
patent: 4683194 (1987-07-01), Saiki et al.
patent: 4683195 (1987-07-01), Mullis et al.
patent: 4729947 (1988-03-01), Middendorf et al.
patent: 4795699 (1989-01-01), Tabor et al.
patent: 4889818 (1989-12-01), Gelfand et al.
patent: 4965188 (1990-10-01), Mullis et al.
patent: 5079352 (1992-01-01), Gelfand et al.
patent: 5171534 (1992-12-01), Smith et al.
patent: 5352600 (1994-10-01), Gelfand et al.
patent: 5427911 (1995-06-01), Ruano
patent: 5484701 (1996-01-01), Cocuzza et al.
Innis et al. Proc. Natl. Acad. Sci. USA 85: 9436-9440, Dec. 1988.
Mason. BioTechniques 12:60-62, Jan. 1992.
Reynolds et al. BioTechniques 15: 462-467, Mar. 1993.
Ruano et al. Proc. Natl. Acad. Sci. USA 88: 2815-2819, Apr. 1991.
Xu et al. Mutation Res. 288:237-248, 1993.
Deng et al., "Simultaneous amplification and sequencing of genomic DNA (SAS): sequencing of 16S rRNA genes using total genmic DNA from Butyrovibrio fibrisolvens, and detection and genotyping of non-cultruable mycoplasma-like organisms directly from total DNA isolated from infected plants", J. Microbiol. Methods 17: 103-113 (1993).
Rao, V. B., "Direct-Sequencing of Polymerase Chain Reaction-Amplified DNA", Anal Biochem, 216: 1-14 (1994).
Kretz et al., "Cycle Sequencing" in PCR Methods and Applications 3: S107-S112 (1994).
Tabor et al., "A single residue in DNA Polymerases of the Escherichia coli DNA polymerase I family is critical for distinguishing between deoxy and dideoxynucleotides", Proc. Nat'l Acad. Sci. USA.92: 6339-6343 (1995).
Reeve et al., A novel thermostable polymerase for DNA sequencing Nature 376: 796-797 (1995).
Kambara et al, "Real Time Automated Simultaneous Doule Stranded DNA Sequencing Using Two-Color Fluorophore Labeling" Biotechnology 9: 648-651 (1991).
Sarkar et al., "Dideoxy Fingerprinting (ddF): A rapid and Efficient Screen for the Presence of Mutations" Genomics 13: 441-443 (1992).
Wiemann et al., "Simultaneous On-Line Sequencing on Both Strands with Two-Fluorescent Dyes" Anal. Biochem. 224: 117-121 (1995).
Gyllenstein et al., "Generation of single-stranded DNA by polymerase chain reaction and its application to direct sequencing of the HLA-DQA locus" Proc. Nat'l Acad. Sci. USA 85: 7652-7656 (1988).
Mullis et al., "Specific Synthesis of DNA in Vitro via a Polymerase-Catalyzed Chain Reaction" Meth. Enzymol. 155: 335-350 (1987).
Ruano et al., "Genotyping and haplotyping of polymorphisms directly from genomic DNA via coupled amplification and sequencing (CAS)" Nucl. Acids Res. 19: 6877-6882 (1991).
Murakawa et al., :Direct Detection of HIV-1 RNA from AIDS and ARC Patient Samples DNA 7: 287-295 (1988).
Carothers et al., "Point Mutation Analysis in A Mammalian Gene: Rapid Preparation of Total RNA, PCR Amplification of cDNA, and Taq Sequencing by a Novel Method" BioTechniques 7: 494-498 (1989).
Murray, V., "Improved Double-Stranded DNA Sequencing Using the Linear Polymerase Chain Reaction", Nucl. Acids Res. 17: 8889 (1989).
Sanger et al., "DNA Sequencing with Chain-Terminating Inhibitors", Proc. Nat'l Acad. Sci. 74: 5463-5467 (1977).
Miller et al., "Chain Terminator Sequencing of Double-Stranded DNA With Built in Error Correction", General Atomics Pre-Print (1991).

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Method for amplification and sequencing of nucleic acid polymers does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Method for amplification and sequencing of nucleic acid polymers, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Method for amplification and sequencing of nucleic acid polymers will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-1175626

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.