Data processing: measuring – calibrating – or testing – Measurement system in a specific environment – Biological or biochemical
Reexamination Certificate
2007-11-27
2007-11-27
Brusca, John S (Department: 1631)
Data processing: measuring, calibrating, or testing
Measurement system in a specific environment
Biological or biochemical
C700S001000, C365S094000
Reexamination Certificate
active
10859868
ABSTRACT:
A method and system for quantifying and correcting spatial-intensity trends for each channel of a microarray data set having one or more channels. The method and system of one embodiment of the present invention selects a set of features from each channel of the microarray data set. Based on the selected set of features, a surface is used to determine the intensities for all features in each channel of the microarray data set. Spatial-intensity trends within the microarray data set are quantified, based on the surface to the intensities for each channel of the microarray data set. After the surface has been determined, the spatial-intensity trend can be removed from the microarray data set.
REFERENCES:
patent: 4707647 (1987-11-01), Coldren et al.
patent: 5019997 (1991-05-01), Halter
patent: 5086319 (1992-02-01), Carolan
patent: 5581487 (1996-12-01), Kelly et al.
patent: 5599695 (1997-02-01), Pease et al.
patent: 5721435 (1998-02-01), Troll
patent: 5744305 (1998-04-01), Fodor et al.
patent: 5753788 (1998-05-01), Fodor et al.
patent: 5801970 (1998-09-01), Rowland et al.
patent: 5812272 (1998-09-01), King et al.
patent: 5834758 (1998-11-01), Trulson et al.
patent: 5837475 (1998-11-01), Dorsel et al.
patent: 5861242 (1999-01-01), Chee et al.
patent: 5948902 (1999-09-01), Honkanen et al.
patent: 6171797 (2001-01-01), Perbost
patent: 6180351 (2001-01-01), Cattell
patent: 6232072 (2001-05-01), Fisher
patent: 6242266 (2001-06-01), Schliefer et al.
patent: 6251685 (2001-06-01), Dorsel et al.
patent: 6258536 (2001-07-01), Oliner et al.
patent: 6269322 (2001-07-01), Templeton et al.
patent: 6323043 (2001-11-01), Caren et al.
patent: 6329143 (2001-12-01), Stryer et al.
patent: 6344316 (2002-02-01), Lockhart et al.
patent: 6345115 (2002-02-01), Ramm et al.
patent: 6349144 (2002-02-01), Shams
patent: 6355423 (2002-03-01), Rothberg et al.
patent: 6406849 (2002-06-01), Dorsel et al.
patent: 6571005 (2003-05-01), Li et al.
patent: 6674882 (2004-01-01), Shams
patent: 2002/0160369 (2002-10-01), Dorsel et al.
patent: 2003/0160183 (2003-08-01), Dorsel et al.
patent: 2003/0216870 (2003-11-01), Wolber et al.
patent: 2004/0021055 (2004-02-01), Corson et al.
patent: 2004/0023224 (2004-02-01), Corson et al.
patent: 1 162 572 (2001-12-01), None
patent: WO 99/08233 (1999-02-01), None
patent: WO 01/06395 (2001-01-01), None
patent: WO 01/81542 (2001-11-01), None
Cheung, et al., “Analysis of Gene Microarray Images,” 1999, IEEE, pp. 627-632.
Kuklin, et al., “High throughput screening of gene expression signatures,” 2000, Genetica 108, pp. 41-46.
Tseng et al., “Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects,” 2001 Oxford University Press, pp. 2549-2557.
Bowtel, Options available -from start to finish- for obtaining expression data by microarray, Nat Genet. Jan. 21, 1999,(1 suppl):25-32.
Yang et al., Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation., Nucleic Acids Res. Feb. 15, 2002;30(4):e15.
Bozinov, Unsupervised technique for robust target separation and analysis of DNA microarray spots through adaptive pixel clustering., Bioinformatics. May 2002; 18(5):747-56.
Press, William H., et al. “Numerical Recipes in C, The Art of Scientific Computing,” 1987, pp. 248-250 and 558-565.
Collins Patrick J.
Corson John F.
Delenstarr Glenda Choate
Ghosh Jayati
Leproust Eric M.
Agilent Technologie,s Inc.
Brusca John S
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