Method and system for analysis of array-based,...

Details Method and system for analysis of array-based,... Method and system for analysis of array-based,...

2006-07-24

2010-02-09

Brusca, John S (Department: 1631)

Data processing: measuring, calibrating, or testing

Measurement system in a specific environment

Biological or biochemical

C435S006120

Reexamination Certificate

active

07660675

ABSTRACT:
Embodiments of the present invention include methods and systems for analysis of comparative genomic hybridization (“CGH”) data, including CGH data obtained from microarray experiments.

REFERENCES:
patent: 2006/0084067 (2006-04-01), Yakhini et al.
patent: 2413130 (2005-10-01), None
Bilke et al. Detection of low level genomic alterations by comparative genomic hybridization based on cDNA micro-arrays Bioinformatics vol. 21, pp. 1138-1145 (2005).
Lipson, D. et al., “Interval Scores for Quality Annotated CGH Data”, Proceedings of the Genomic Signal Processing and Statistics Workshop, Gensips 2005, XP007906019 Newport. Rhode Island. Retrieved from the Internet: URL: http://users.isr.ist.utl.pt/Ijmrs/research/Genomics/gensips2005/papers/Gensips2005—SPSApproach140.p.df. [retrieved on Oct. 20, 2008].
Lipson, D. et al., “Efficient Calculation of Interval Scores for DNA Copy Number Data Analysis”, J. Computational Biology, Mar. 2006, pp. 215-228, vol. 13, No. 2.
“Agilent CGH Analytics 3.2 Online Help” Internet Citation, 2005, pp. 85-91. XP002483250 Retrieved from the Internet: URL:http://www.chem.agilent.com/temp.rad82250/00001095.pdf. Retrieved on Jun. 5, 2008.
EP Search Report, Application No. EP 07 25 2929, dated Jun. 11, 2008.
“Agilent Oligonucleotide Array-Based CGH for Genomic DNA Analysis” Protocol Version 4.0 Jun. 2006 Agilent Technologies.

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