Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid
Reexamination Certificate
2011-07-05
2011-07-05
Kapushoc, Stephen (Department: 1634)
Chemistry: molecular biology and microbiology
Measuring or testing process involving enzymes or...
Involving nucleic acid
C435S091200, C536S023100
Reexamination Certificate
active
07972783
ABSTRACT:
Provided herein are methods to discover and use single nucleotide polymorphisms (SNP) for determining the genotype of a horned/polled ruminant subject. The present invention further provides specific nucleic acid sequences, SNPs, and SNP patterns that can be used for determining the genotype of a horned/polled ruminant subject.
REFERENCES:
patent: 4656127 (1987-04-01), Mundy
patent: 5002867 (1991-03-01), Macevicz
patent: 5110745 (1992-05-01), Kricka et al.
patent: 5304487 (1994-04-01), Wilding et al.
patent: 5424184 (1995-06-01), Santamaria et al.
patent: 5578443 (1996-11-01), Santamaria et al.
patent: 5593830 (1997-01-01), Santamaria et al.
patent: 5595870 (1997-01-01), Knapp et al.
patent: 5629149 (1997-05-01), Santamaria et al.
patent: 5679524 (1997-10-01), Nikiforov et al.
patent: 5681484 (1997-10-01), Zanzucchi et al.
patent: 5888819 (1999-03-01), Goelet et al.
patent: 5919626 (1999-07-01), Shi et al.
patent: 5952174 (1999-09-01), Nikiforov et al.
patent: 5972604 (1999-10-01), Santamaria et al.
patent: 6004744 (1999-12-01), Goelet et al.
patent: 6136962 (2000-10-01), Shi et al.
patent: 6235473 (2001-05-01), Friedman et al.
patent: 6268490 (2001-07-01), Imanishi et al.
patent: 6287821 (2001-09-01), Shi et al.
patent: 6294336 (2001-09-01), Boyce-Jacino et al.
patent: 6322968 (2001-11-01), Head et al.
patent: 6337188 (2002-01-01), Head et al.
patent: 6387626 (2002-05-01), Shi et al.
patent: 6537748 (2003-03-01), Goelet et al.
patent: 6872521 (2005-03-01), Boyce-Jacino et al.
patent: 6946249 (2005-09-01), Head et al.
patent: 2005/0153328 (2005-07-01), DeNise et al.
patent: WO 89/10414 (1989-11-01), None
patent: WO 91/02087 (1991-02-01), None
patent: WO 92/15712 (1992-09-01), None
patent: WO 2005/052133 (2005-06-01), None
Alderborn et al., “Determination of Single-Nucleotide Polymorphisms by Real-time Pyrophosphate DNA Sequencing,”Genome Research, vol. 10: pp. 1249-1258, (2000).
Asai-Coakwell, “International Conference on Animal Genetics,” (in Göttingen-Germany),International Society for Animal Genetics, Proceedings (2002).
Brenneman et al., “The Polled Locus Maps to BTA1 in a Bos indicus X Bos Taurus Cross,”The Journal of Heredity, vol. 87, No. 2: pp. 156-161 (1996).
Cai et al., “Flow Cymetry-Based Minisequencing: A New Platform for High-Throughput Single-Nucleotide Polymorphism Scoring,”Genomics, vol. 66: pp. 135-143 (2000).
Chee et al., “Accessing Genetic Information with High-Density DNA Arrays,”Science, vol. 274: pp. 610-614 (1996).
Chen et al., “Florescence Polarization in Homogeneous Nucleic Acid Analysis,”Genome Research, vol. 9: pp. 492-498(1999).
Clark et al., “Haplotype Structure and Population Genetic Inferences from Nucleotide-Sequence Variation in Human Lipoprotein Lipase,”Am. J. Hum. Genet., vol. 63: pp. 595-612 (1998).
Clark, “Inference of Haplotypes from PCR-amplified Samples of Diploid Populations,”Mol. Biol Evol., vol. 7, No. 2: pp. 111-122 (1990).
Ecker and Crooke, “Combinatorial Drug Discovery: Which Methods Will Produce the Greatest Value?”Biotechnology, vol. 13: pp. 351-360 (1995).
Excoffier and Slatkin, “Maximum-Likelihood Estimation of Molecular Haplotype Frequencies in a Diploid Population,”Mol. Biol. Evol., vol. 12, No. 5: pp. 921-927, (1995).
Fan et al., “Parallel Genotyping of Human SNPs Using Generic High-density Oligonucleotide Tag Arrays,”Genome Research, vol. 10: pp. 853-860, (2000).
Geman and Geman, “Stochastic relaxation, Gibbs distributions, and the Bayesian restoration of images,”IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 6: pp. 721-741 (1984).
Georges et al., “Microsatellite Mapping of a Gene Affecting Horn Development in Bos taurus,”Nature Genetics, vol. 4: pp. 206-210 (1993).
Goonewardene, et al., “A Study of Growth and Carcass Traits in Dehorned and Polled Composite Bulls,”Canadian Journal of Animal Science, vol. 79: pp. 383-385 (1999).
Grossman et al., “High-Density Multiplex Detection of Nucleic Acid Sequences: Oligonucleotide Ligation Assay and Sequence-Coded Separation,”Nucleic Acids Research, vol. 22, No. 21: pp. 4527-4534 (1994).
Hardenbol et al., “Multiplexed Genotyping with Sequence-tagged Molecular Inversion Probes,”Nature Biotechnology, vol. 21, No. 6: pp. 673-678 (2003).
Harlizius et al., “New Markers on Bovine Chromosome 1 are Closely Linked to the Polled Gene in Simmental and Pinzgauer Cattle,”Mammalian Genome, vol. 8: pp. 255-257 (1997).
Hatch et al., “Rolling Circle Amplification of DNA Immobilized on Solid Surfaces and its Application to Multiplex Mutation Detection,”Genetic Analysis, vol. 15: pp. 35-40 (1999).
Hermann et al., “Rapid β-Globin Genotyping by Multiplexing Probe Melting Temperature and Color,”Clinical Chemistry, vol. 46, No. 3: pp. 425-428 (2000).
Jellinek et al., “Potent 2'-Amino-2'Deoxypyrimidine RNA Inhibitors of Basic Fibroblast Growth Factor,”Biochemistry, vol. 34: pp. 11363-11372 (1995).
Kennedy et al., “Large-scale Genotyping of Complex DNA,”Nature Biotechnology, vol. 21, No. 10: pp. 1233-1237 (2003).
Kornher and Livak, “Mutation Detection Using Nucleotide Analogs that Alter Electrophoretic Mobility,”Nucleic Acids Research, vol. 17, No. 19: pp. 7779-7784 (1989).
Kuppuswamy et al., “Single Nucleotide Primer Extension to Detect Genetic Diseases: Experimental Application to Hemophilia B (Factor IX) and Cystic Fibrosis Genes,”Biochemistry, vol. 88: pp. 1143-1147 (1991).
Labate, “Software for Population Genetic Analyses of Molecular Marker Data,”Crop Science, vol. 40: pp. 1521-1528 (2000).
Lin et al., “Modified RNA Sequence Pools for in Vitro Selection,”Nucleic Acids Research, vol. 22, No. 24: pp. 5229-5234 (1994).
Lohmann et al., “Fast and Flexible Single Nucleotide Polymorphism (SNP) Detection with the LightCycler System,”Biochemica, vol. 4: pp. 23-28 (2000).
Makridakis and Reichardt, Research Report: “Multiplex Automated Primer Extension Analysis: Simultaneous Genotyping of Several Polymorphisms,”BioTechniquesvol. 31, No. 6: pp. 1374-1380 (2001).
Marras et al., “Multiplex Detection of Singe-Nucleotide Variations Using Molecular Beacons,”Genetic Analysis, vol. 14: pp. 151-156 (1999).
Maxam and Gilbert, “A New Method for Sequencing DNA: DNA Chemistry/Dimethyl Sulfate Cleavage/Hydrazine/Piperidine”Biochemistry, vol. 74, No. 2: pp. 560-564 (1977).
Montgomery et al., “Mapping the Horns (Ho) Locus in Sheep: A Further Locus Controlling Horn Development in Domestic Animals,”Journal of Heredity, vol. 87: pp. 358-363 (1996).
Nairz et al., “High-resolution SNP Mapping by Denaturing HPLC,” PNAS, vol. 99, No. 16: pp. 10575-10580 (2002).
Nilsson et al., “Padlock Probes: Circularizing Oligonucleotides for Localized DNA Detection,”Science, vol. 265: pp. 2085-2088 (1994).
Nyren et al., “Solid Phase DNA Minisequencing by an Enzymatic Luminometric Inorganic Pyrophosphate Detection Assay”,Analytical Biochemistry, vol. 208, pp. 171-175 (1993).
Oliphant et al., “BeadArray™ Technology: Enabling an Accurate, Cost-Effective Approach to High-Throughput Genotyping,”BioTechniques, vol. 32: pp. S56-S61 (2002).
Pagratis et al., “Potent 2'-amino- and 2'-fluoro-2'- Deoxyribonucleotide RNA Inhibitors of Keratinocyte Growth Factor,”Nature Biotechnology, vol. 15: pp. 68-73 (1997).
Prezant et al., “Trapped-Oligonucleotide Nucleotide Incorporation (TONI) Assay, a Simple Method for Screening Point Mutations”, Human Mutation, vol. 1, pp. 159-164 (1992).
Prince et al., “Robust and Accurate Single Nucleotide Polymorphism Genotyping by Dynamic Allele-Specific Hybridization (DASH): Design Criteria and Assay Validation,”Genome Research, vol. 11: pp. 152-162 (2001).
Prober et al., “A Syst
Chevalier Philip
DeNise Sue
Ferrie Bonita
Hutton Michelle
Kerr Richard
Branhaven LLC
Johnson & Associates
Kapushoc Stephen
LandOfFree
Method and markers for determining the genotype of... does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with Method and markers for determining the genotype of..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Method and markers for determining the genotype of... will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-2727117