Method and apparatus for DNA-sequencing using reduced number of

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

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435 911, 422 50, 422 681, 422101, C12Q 168, C12P 1934

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059811862

ABSTRACT:
The sequence of a target nucleic acid polymer can be determined by (a) performing a first chain-extension sequencing reaction on the target nucleic acid polymer in a reaction mixture containing first and second chain-terminators to produce a first product mixture containing commonly-labeled polynucleotide fragments complementary to a first strand of the target nucleic acid polymer, each fragment in the mixture being terminated with the first or second chain-terminator; (b) performing a second chain extension sequencing reaction on the target nucleic acid polymer in a reaction mixture containing the first and a third chain-terminator to produce a second product mixture containing commonly-labeled polynucleotide fragments complementary to the first strand of the target nucleic acid polymer, each fragment in the mixture being terminated with the first or the third chain-terminator, said first, second and third chain-terminators each being different; and (c) evaluating the lengths of the polynucleotide fragments in the first and second product mixtures to determine the sequence of the target nucleic acid polymer. In the evaluation step, the first and second product mixtures can be evaluated in two separate lanes of a gel, in which case the labels employed in the two chain extension sequencing reactions can be the same. Alternatively, if the labels employed in the two chain extension reactions are different and spectroscopically distinguishable from one another, the first and second product mixtures can be combined before electrophoresis and the entire analysis can be performed in a single lane of a gel.

REFERENCES:
patent: 3742202 (1973-06-01), Spreitzhofer
patent: 4329591 (1982-05-01), Fujiwara et al.
patent: 4720786 (1988-01-01), Hara
patent: 4811218 (1989-03-01), Hunkapiller et al.
patent: 4823007 (1989-04-01), Hanson
patent: 4865968 (1989-09-01), Orgel et al.
patent: 4941092 (1990-07-01), Hara et al.
patent: 4960999 (1990-10-01), McKean et al.
patent: 4982326 (1991-01-01), Kaneko
patent: 5108179 (1992-04-01), Myers
patent: 5119316 (1992-06-01), Dam et al.
patent: 5124247 (1992-06-01), Ansorge
patent: 5190632 (1993-03-01), Fujimiya et al.
patent: 5213673 (1993-05-01), Fujimiya et al.
patent: 5246866 (1993-09-01), Nasu et al.
patent: 5273632 (1993-12-01), Stockham et al.
patent: 5290419 (1994-03-01), Kambara et al.
patent: 5360523 (1994-11-01), Middendorf et al.
patent: 5365455 (1994-11-01), Tibbetts et al.
patent: 5419825 (1995-05-01), Fujii
patent: 5502773 (1996-03-01), Tibbets et al.
patent: 5667971 (1997-09-01), Hochberg
Bowling et al., "Neighboring Nucleotide Interactions During DNA Sequencing Electrophoresis", Nucleic Acids Res. 19: 3089-3097 (1991).
Giddings et al., "An Adaptive, Object Oriented Strategy for Base calling in DNA Sequences", Nucleic Acids Res. 21: 4530-4540 (1993).
Golden II, et al., "Pattern Recognition for Automated DNA Sequencing: I. On-Line Signal Conditioning and Feature Extraction for Basecalling".
Tibbetts et al., "Neural Networks for Automated Basecalling of gel-based Sequencing Ladders".
Smith et al., "Fluorescence detection of automated DNA sequence analysis", Nature 321: 674-679 (1986).
Mayrand et al., "The use of fluorescence detection and internal lane standards to size PCR products".
Koutny et al., "Automated Image Analysis fir Distortion Compensation in Sequencing Gel Electrophoresis" Applied Spectroscopy 46: 136-141 (1992).
Ingber and Rosen, "Genetic Algorithms and Very Fast Simulated Annealing: A Comparison" Mathematics and Computer Modelling 16: 87-100 (1992).
Ingber, L., "Simulated Annealing: Practice versus Theory", Mathematical and Computer Modelling 18: 29-57 (1993).
Ingber,L., "Adaptive Simulated Annealing (ASA) : Lessons Learned". Control and Cybernetics 1995).
Ingber, L., "Very Fast Simulated Re-Annealing" Mathematical and Computer Modelling 12: 967-973 (1989).
Landegren et al., "DNA Diagnostics--Molecular Techqniues and Automation" Science 242: 229-237 (1988).
Sarkar et al., "Dideoxy Fingerprinting (ddF) : A Rapid and Efficient Screen for the Presence of Mutations" Genomics 13: 441-443 (1992).
Lin et al., "Characterization of Genetic Defects of Hemophilia A in Patients of Chinese Origin" Genomics 18: 496-504 (1993).
Langemeir et al, "Application of Cycle Dideoxy Fingerprinting to Screening Heterogenous Populations of the Equine Infectious Anemia Virus", BioiTechniques 17: 484-490 (1994).
Krishnamani et al., "Detection of a Novel Arginine Vasopressin Defect by Dideoxy Fingerprinting" J. Clin. Endocrinol. & Metabol. 77: 596-598 (1993).
Ellison et al., "Detection of Mutations and Polymorphisms Using Fluorescence-Based Dideoxy Fingerprinting (F-ddF)", BioTechniques 17: 742-753 (1994).
Olesen et al., "Chemiluminescent DNA Sequencing with Multiplex Labeling", Biotechniques 15: 480-485 (1993).
Kambara et al., "Real Time Automated Simultaneous Double Stranded DNA Sequencing Using Two-Color Fluorophore Labelling" Biotechnology 9: 63-66 (1991).

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