Melanoma gene signature

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

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Reexamination Certificate

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07615349

ABSTRACT:
Methods and compositions for evaluating gene expression in melanoma samples are provided herein.

REFERENCES:
patent: 7056674 (2006-06-01), Baker et al.
patent: 7081340 (2006-07-01), Baker et al.
patent: 7171311 (2007-01-01), Dai et al.
patent: 7247426 (2007-07-01), Yakhini et al.
patent: 2006/0183141 (2006-08-01), Change et al.
patent: 2007/0154889 (2007-07-01), Wang et al.
Tockman et al (Cancer Res., 1992, 52:2711s-2718s).
Greenbaum et al. (Genome Biology, 2003, vol. 4, Issue 9, pp. 117.1-117.8).
Glas et al., “Converting a breast cancer microarray signature into a high-throughput diagnostic test,”BMC Genomics, vol. 7:278-288 (2006).
Ai et al., “Epigenetic Silencing of the Tumor Suppressor Cystatin M Occurs during Breast Cancer Progression,”Cancer Research, vol. 66:7900-7909 (2006).
An et al., “Deletion of tumor suppressor genes in Chinese non-small cell lung cancer,”Cancer Letters, vol. 184:189-195 (2002).
Balch et al. “A New American Joint Committee on Cancer Staging System for Cutaneous Melanoma,”Cancer, vol. 88:1484-1491 (2000).
Balch et al., “Final version of the American Joint Committee on Cancer Staging System for Cutaneous Melanoma,”Journal of Clinical Oncology, vol 19:3635-3648 (2001).
Balch et al., “Prognostic Factors Analysis of 17,600 Melanoma Patients: Validation of the American Joint Committee on Cancer Melanoma Staging System,”Joint of Clinical Oncology, vol. 19:3622-3634 (2001).
Barrow et al., “Tumor Antigen Expression in Melanoma Varies According to Antigen and Stage,”Clin. Can. Res., vol. 12:764-771 (2006).
Bauskin et al., “Role of Macrophage Inhibitory Cytokine-1 in Tumorigenesis and Diagnosis of Cancer,”Cancer Research, vol. 66:4983-4986 (2006).
Baylin et al., “Alterations in DNA Methylation: A Fundamental Aspect of Neoplasia,”Adv. in Cancer Res, vol. 72:141-196 (1998).
Bittner et al., “Molecular classification of cutaneous malignant melanoma by gene expression profiling,”Nature, vol. 406:536-540 (2000).
Brasseur et al. “Expression ofMageGenes in Primary and Metastatic Cutaneous Melanoma,”Int. J. Cancer, vol. 63:375-380 (1995).
Cascinelli et al., “Sentinel Lymph Node Biopsy in Cutaneous Melanoma: The WHO Melanoma Program Experience,”Annals of Surgical Oncology, vol. 7:469-474 (2000).
Chen et al., “Decreased PITX1 homeobox gene expression in human lung cancer,”Lung Cancer, vol. 55:287-294 (2007).
Coppola et al., “Correlation of Osteopontin Protein Expression and Pathological Stage across a Wide Variety of Tumor Histologies,”Clin. Can. Res., vol. 10:184-190 (2004).
DeRisi et al., “Use of a cDNA microarray to analyze gene expression patterns in human cancer,”Nature Genetics, vol. 14:457-460 (1996).
Dobbin et al, “Interlaboratory Comparability Study of Cancer Gene Expression Analysis Using Oligonucleotide Microarrays,”Clinical Cancer Research, vol. 11:565-572 (2005).
Eton et al., “Prognostic Factors for Survival of Patients Treated Systemically for Disseminated Melanoma,”Journal of Clinical Oncology, vol. 16:1103-1111 (1998).
Fujiwara et al., “Isolation of a candidate tumor suppressor gene on chromosome 8p21.3-p22 that is homologous to an extracellular domain of the PDGF receptor beta gene,”Oncogene, vol. 10:891-895 (1995).
Gallagher et al., “Multiple markers for melanoma progression regulated by DNA methylation: Insights from transcriptomic studies,”Carcinogenesis, vol. 26:1856-1867 (2005).
Garraway et al., “Integrative genomic anlayses identifyMITFas a lineage survival oncogene amplified in malignant melanoma,”Nature, vol. 436:117-122 (2005).
Golub et al., “Molecular Classification of Cancer: Class Discovery and Class Prediction by Gene Expression Monitoring,”Science, vol. 286:531-537 (1999).
Haddad et al., “The Progression of Melanoma Nodal Metastasis is Dependent on Tumor Thickness of the Primary Lesion,”Annals of Surgical Oncology, vol. 6:144-149 (1999).
Hanahan et al., “The Hallmarks of Cancer,”Cell, vol. 100:57-70 (2000).
Haqq et al., “The gene expression signatures of melanoma progression,”Proc. Natl. Acad. Sci. U. S. A., vol. 102:6092-6097 (2005).
Harbig et al., “A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus 2.0 array,”Nucleic Acids Research, vol. 33:e31 (2005).
Herman et al., “Gene Silencing in Cancer in Association with Promoter Hypermethylation,”N. Engl. J. Med., vol. 349:2042-2054 (2003).
Hodi, “Well-Defined Melanoma Antigens as Progression Markers for Melanoma: Insights into Differential Expression and Host Response Based on Stage,”Clin. Can. Res., vol. 12:673-678 (2006).
Jaeger et al., “Gene Expression Signatures for Tumor Progression, Tumor Subtype, and Tumor Thickness in Laser-Microdissected Melanoma Tissues,”Clin. Can. Res., vol.13:806-815 (2007).
Jemal et al., “Cancer Statistics, 2007,”C.A. Cancer J. Clin., vol. 57:43-66 (2007).
Jensen et al., “Down-Regulation of Pro-Apoptotic Genes is an Early Event in the Progression of Malignant Melanoma,”Annals of Surgical Oncology, vol. 14:1416-1423 (2007).
Kim et al., “Epigenomic Profiling Reveals Novel and Frequent Targets of Aberrant DNA Methylation-Mediated Silencing in Malignant Glioma,”Cancer Res., vol. 66:7490-7501 (2006).
Kolfschoten et al., “A genetic screen identifies PITX1 as a suppressor of RAS activity and tumorigenicity,”Cell, vol. 121:849-858 (2005).
Lerebours et al., “Fine Deletion Mapping of Chromosome 8p in Non-Small-Cell Lung Carcinoma,”Int. J. Cancer, vol. 81:854-858 (1999).
Levy et al., “MITF: master regulator of melanocyte development and melanoma oncogene,”Trends Molecular Medicine, vol. 12:406-414 (2006).
Li et al., “Model-based analysis of oligunucleotide arrays: Expression index computation and outlier detection,”Proc. Natl. Acad. Sci. U.S.A., vol. 98:31-36 (2001).
Lord et al.,. “IncreasedCDX2and decreasedPITX1homeobox gene expression in Barrett's esophagus and Barrett's-associated adenocarcinoma,”Surgery, vol. 138:924-931 (2005).
McGill et al., “c-Met Expression is Regulated by Mitf in the Melanocyte Lineage,”J. Biol. Chem., vol. 281:10365-10373 (2006).
Momparler, “Cancer epigenetics,”Oncogene, vol. 22:6479-6483 (2003).
Muthusamy et al., “Epigenetic Silencing of Novel Tumor Suppressors in Malignant Melanoma,”Cancer Res., vol. 66:11187-11193 (2006).
Riker, “Isolation and Culture of Melanoma Cell Lines,”Cancer Cell Culture: Methods and Protocols, Totowa: Humana Press, vol. 88:93-100 (2004).
Riker et al., Development and Characterization of Melanoma Cell Lines Established by Fine Needle Aspiration Biopsy: Advances in the Monitoring of Patients with Metastatic Melanoma,Cancer Detection and Prevention, vol. 23:387-396 (1999).
Rivenbark et al., “DNA methylation-dependent silencing of CST6 in human breast cancer cell lines,”Laboratory Investigation, vol. 86:1233-1242 (2006).
Seitz et al., “Genetic Background of Different Cancer Cell Lines Influences the Gene Set Involved in Chromosome 8 Mediated Breast Tumor Suppression,”Genes, Chromosomes&Cancer, vol. 45:612-627 (2006).
Seykora et al., “Gene Expression Profiling of Melanocytic Lesions,”The American Journal of Dermatopathology, vol. 25:6-11 (2003).
Smith et al., “Whole-Genome Expression Profiling of the Melanoma Progression Pathway Reveals Marked Molecular Differences Between Nevi/Melanoma in Situ and Advanced-Stage Melanomas,”Cancer Biology&Therapy, vol. 4:1018-1029 (2005).
Talantov et al., “Novel Genes Associated with Malignant Melanoma but not Benign Melanocytic Lesions,”Clinical Cancer Research, vol. 11:7234-7242 (2005).
Trent et al., “Tumorigenic

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