Isotopically-labeled proteome standards

Chemistry: analytical and immunological testing – Peptide – protein or amino acid

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C436S173000, C435S041000

Reexamination Certificate

active

07939331

ABSTRACT:
The invention provides methods for quantifying biomolecules, such as polypeptides in mass spectrometric analysis. The methods include use of a biomolecule standard having at least one atomic isotope different than that of the naturally occurring isotopes in the biomolecule of interest. Methods of the present invention also include methods for quantifying biomolecules where the copy biomolecule standard is made by expressing the biomolecule using a recombinant cell. Further included are the biomolecule standards themselves, method for making such standards, kits, systems, reagents, and engineered cells relating to the use of biomolecule standards in mass spectrometric analysis.

REFERENCES:
patent: 3591768 (1971-07-01), Torres
patent: 4950608 (1990-08-01), Kishimoto et al.
patent: 5229580 (1993-07-01), Chioniere et al.
patent: 5665539 (1997-09-01), Sano et al.
patent: 5985548 (1999-11-01), Collier et al.
patent: 5990456 (1999-11-01), Kilbride et al.
patent: 6117631 (2000-09-01), Nilson
patent: 6197599 (2001-03-01), Chin et al.
patent: 6391649 (2002-05-01), Chait
patent: 6511809 (2003-01-01), Baez et al.
patent: 6642059 (2003-11-01), Chait
patent: 6670194 (2003-12-01), Aebersold et al.
patent: 2003/0157720 (2003-08-01), Li
patent: 2004/0033530 (2004-02-01), Awrey et al.
patent: 2004/0072251 (2004-04-01), Anderson
patent: 2004/0229283 (2004-11-01), Gygi et al.
patent: WO98/30684 (1998-07-01), None
Zor and Selinger, “Linearization of the Bradford Protein Assay increases its sensitivity: theoretical and experimental studies”, Analytical Biochemistry 236(2): 302-308 (1996).
Blagoev, Blagoy et al., “Temporal Analysis of Phosphotyrosine-Dependent Signaling Networks by Quantitative Proteomics”,Nature Biotech. vol. 22, No. 9 Aug. 15, 2004, 1139-1145.
Bonk, et al., “MALDI-TOF-MS Analysis of Protein and DNA”,Neuroscientist7 2001 , 12.
Everly, Patrick A. et al., “Quantitative Cancer Proteomics: Stable Isotope Labeling with Amino Acids in Cell Culture (SILAC) as a Tool for Prostate Cancer Research”,Am. Society for Biochem and Mol. Bio.(Mol. and Cell. Proteomics 3.7) vol. 3 2004 , 729-735.
Foster, Leonard J. et al., “Unbiased Quantitative Proteomics of Lipid Rafts Reveals High Specificity for Signaling Factors”,PNASvol. 100, No. 10 May 13, 2003 , 5813-5818.
Ibarrola, Nieves et al., “A Proteomic Approach for Quantitation of Phosphorylation Using Stable Isotope Labeling in Cell Culture”,Anal. Chem. vol. 75, No. 22 Nov. 15, 2003 , 6043-6049.
Karas, John J. et al., “Matrix Assisted Ultrviolet Laser Desorption of Non-volatile Compounds”,Mass Spectrom. Ion Processes78 1987 , 53.
Oda, Y. et al., “Accurate Quantitation of Protein Expression and Site-Specific Phosphorylation.”,Proc Natl Acad Sci U S A96(12): 1999 , 6591-6.
Ong, Shao-en et al., “Stable Isotope Labeling by Amino Acids in Cell Culture, SILAC as a Simple and Accurate Approach to Expression Proteomics”,Molecular&Cellular Proteomics1(5) May 5, 2002 , 376-386.
Wu, Christine C. et al., “Metabolic Labeling of Mammalian Organisms with Stable Isotopes for Quantitative Proteomic Analysis”,Anal. Chem. vol. 76, No. 17 Sep. 1, 2004 , 4951-4959.

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Isotopically-labeled proteome standards does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Isotopically-labeled proteome standards, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Isotopically-labeled proteome standards will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-2701733

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.