Isotope-coded ionization-enhancing reagents (ICIER) for...

Chemistry: analytical and immunological testing – Peptide – protein or amino acid

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C436S161000, C436S173000, C436S175000, C436S056000

Reexamination Certificate

active

06905879

ABSTRACT:
Arginine-containing cysteine-modifying compounds useful for MALDI-MS analysis of proteins are provided. These compounds termed isotope-coded ionization enhancement reagents (ICIER) can provide ionization enhancement in MALDI-MS, relative quantitation, and additional database searching constraints at the same time without any extra sample manipulation. More specifically, ICIER increase the ionization efficiency of cysteine-containing peptides by attachment of a guanidino functional group. ICIER also increase the overall hydrophilicity of these peptides due to the hydrophilic nature of ICIER and thus increase the percentage of recovery of these peptides during sample handling and processing such as in-gel digestion or liquid chromatography. Finally, a combination of both light and heavy ICIER provides an accurate way to obtain relative quantitation of proteins by MALDI-MS and additional database searching constraints (number of cysteine residues in every single peptide peak) to increase the confidence of protein identification by peptide mass mapping.

REFERENCES:
patent: 4977320 (1990-12-01), Chowdhury
patent: 5245186 (1993-09-01), Chait
patent: 5288644 (1994-02-01), Beavis
patent: 5453247 (1995-09-01), Beavis
patent: 5643798 (1997-07-01), Beavis
patent: 5792664 (1998-08-01), Chait
patent: 6629040 (2003-09-01), Goodlett et al.
patent: 2002/0076817 (2002-06-01), Figeys et al.
patent: WO91/04781 (1991-04-01), None
patent: WO93/24834 (1993-12-01), None
patent: WO00/11208 (2000-03-01), None
patent: WO 02/48717 (2002-06-01), None
E. Krause et al, “The Dominance of Arginine-Containing Peptides in MALDI-Derived Tryptic Mass Fingerprints of Proteins”, Analytical Chemistry, 71(19)4160-4165 (Oct., 1999).
M. Mann, “Quantitative Proteomics?”, Natue Biotechnology, 17:954-955 (Oct., 1999).
S. Sechi et al, “Modification of Cysteine Residues by Alkylation. A Tool in Peptide Mapping and Protein Identification”, Analytical Chemistry, 70(24):5150-5158 (Dec., 1998).
S. Gygi et al, “Quantitative Analysis of Complex Protein Mixtures Using Isotope-Coded Affinity Tags”, Nature Biotechnology, 17:994-999 (Oct., 1999).
D. Fenyo et al, “Protein Identification Using Mass Spectrometric Information”, Electrophoresis, 19:998-1005 (1998), no month.
Y. Qiu et al, “Acid-Labile Isotope-Coded Extractant (ALICE) and its Use in Quantitative Mass Spectrometric Analysis of Protein Mixtures”, U.S. Appl. No. 10/045,170, filed Oct. 22, 2001.
Mckendrick, et al., “Rapid Mass Spectrometric Determination of Preferred Irreversible Proteinase Inhibitors in Combinatorial Libraries”, International Journal of Mass Spectrometry, 176(1-2):113-124 (1998), no month.
Brancia, et al., “Improved Matrix-Assisted Laser Desorption/Ionization Mass Spectrometric Analysis of Tryptic Hydrolysates of Proteins Following Guanidination of Lysine-Containing Peptides”, Rapid Communications in Mass Spectrometry, 14(21):2070-2073 (2000), no month.
Kratzer, et al., “Suppression Effects i Enzymatic Peptide Ladder Sequencing Using Ultraviolet—Matrix Assisted Laser Desorption/Ionization—Mass Spectrometry”, Electrophoresis, 19(11):1910-1919 (1998).

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Isotope-coded ionization-enhancing reagents (ICIER) for... does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Isotope-coded ionization-enhancing reagents (ICIER) for..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Isotope-coded ionization-enhancing reagents (ICIER) for... will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-3520260

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.