Imaging microarrays

Data processing: measuring – calibrating – or testing – Measurement system in a specific environment – Biological or biochemical

Reexamination Certificate

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C700S266000, C703S002000

Reexamination Certificate

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07636636

ABSTRACT:
A method of obtaining a corrected image of a microarray includes acquiring an image of a microarray including a target spot, and processing the image to correct for background noise and chip misalignment. The method also includes analyzing the image to identify a target patch, edit debris, and correct for ratio bias; and detecting single copy number variation in the target spot using an objective statistical analysis that includes a t-value statistical analysis. The method provides statistically robust computational processes for accurately detecting genomic variation at the single copy level.

REFERENCES:
patent: 4926251 (1990-05-01), Sekizawa et al.
patent: 5127063 (1992-06-01), Nishiya et al.
patent: 5155558 (1992-10-01), Tannenbaum et al.
patent: 5291563 (1994-03-01), Maeda
patent: 5638460 (1997-06-01), Nishimori et al.
patent: 5663319 (1997-09-01), Bittner et al.
patent: 5756696 (1998-05-01), Gray et al.
patent: 5776688 (1998-07-01), Bittner et al.
patent: 5804384 (1998-09-01), Muller et al.
patent: 5824478 (1998-10-01), Muller
patent: 6140653 (2000-10-01), Che
patent: 6165714 (2000-12-01), Lane et al.
patent: 6221592 (2001-04-01), Schwartz et al.
patent: 6251601 (2001-06-01), Bao et al.
patent: 2002/0097898 (2002-07-01), Brown et al.
Basarsky, T. et al. Overview of a microarray scanner: design essentials for an integrated acquisition and analysis platform, Schena M. (ed.) Microarray Biochip Technology, BioTechniques Books, Natick MA pp. 265-284 (2000).
Chen, Y. et al. Ratio-based decisions and the quantitative analysis of cDNA microarray images. J. Biomedical Optics 2:364-374 (1997).
Deyholos MK, et al. High density microarrays for gene expression analysis. Cytometry 43:229-238 (2001).
DuManoir, S. et al. “Quantitative analysis of comparative genomic hybridization.” Cytometry 19:27-41 (1995).
Eisen, Michael “ScanAlyze User Manual” Copyright 1998-9 Stanford University pp. 1-27.
Heiskanen MA, et al., “Detection of gene amplification by genomic hybridization to cDNA microarrays.” Cancer Research 60:799-802 (2000).
Jain AN, et al., Quantitative analysis of chromosomal CGH in human breast tumors associates copy number abnormalities with p53 status and patient survival. PNAS 98:7952-7957 (2001).
Moore, et al. “A t-Statistic for Objective Interpretation of CGH Profiles,” Cytometry 28:183-190 (1997), published by Wiley-Liss, Inc.
Pinkel, D., et al, “High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays.” Nature Genetics, 20:207-211 (Oct. 1998).
Piper, J. et al. “Computer image analysis of comparative genomic hybridization.” Cytometry 19:10-26 (1995).
Pollack, J.R., et al. “Genome-wide analysis of DNA copy-number changes using cDNA microarrays.” Nature Genetics 23:41-46. (Sep. 1999).
Solinas-Toldo S. et al., Matrix-based comparative genomic hybridization: biochips to screen for genomic imbalances. Genes, Chromosomes & Cancer 20:399-407 (1997).
Zhou X-Y, et al., “Information processing issues and solutions associated with microarray technology.” Schena M. (ed.) Microarray Biochip Technology, BioTechniques Books, Natick MA, pp. 167-200 (2000).
GenoSensor Reader System User Guide, Copyright 1999-2001 Vysis Inc. 117 pages total.
GenoSensorV1.0 UserGuide.30-605020 Rev. A 799, Aug. 1999.
GenoSensorV1.0.2 UserGuide.30-605020 Rev. B 500 Jun. 5, 2000.

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