Image processing and analysis of individual nucleic acid molecul

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422 55, 422 58, 422 99, 422129, 435 6, B01J 1908, G01N 2100, G01N 3122, B01L 300

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057209286

ABSTRACT:
A method for observing and determining the size of individual molecules and for determining the weight distribution of a sample containing molecules of varying size, which involves placing a deformable or nondeformable molecule in a medium, subjecting the molecule to an external force, thereby causing conformational and/or positional changes, and then measuring these changes. Preferred ways to measure conformational and positional changes include: (1) determining the rate at which a deformable molecule returns to a relaxed state after termination of the external force, (2) determining the rate at which a molecule becomes oriented in a new direction when the direction of the perturbing force is changed, (3) determining the rate at which a molecule rotates, (4) measuring the length of a molecule, particularly when it is at least partially stretched, or (5) measuring at least one diameter of a spherical or ellipsoidal molecule. Measurements of relaxation, reorientation, and rotation rates, as well as length and diameter can be made using a light microscope connected to an image processor. Molecule relaxation, reorientation and rotation also can be determined using a microscope combined with a spectroscopic device. The invention is particularly useful for measuring polymer molecules, such as nucleic acids, and can be used to determine the size and map location of restriction digests. Breakage of large polymer molecules mounted on a microscope slide is prevented by condensing the molecules before mounting and unfolding the molecules after they have been placed in a matrix.

REFERENCES:
patent: 4473452 (1984-09-01), Cantor et al.
patent: 4695548 (1987-09-01), Cantor et al.
patent: 4737251 (1988-04-01), Carle et al.
patent: 4767700 (1988-08-01), Wallace
patent: 4870004 (1989-09-01), Conroy et al.
patent: 5059294 (1991-10-01), Lizardi
patent: 5079169 (1992-01-01), Chu et al.
patent: 5314829 (1994-05-01), Coles
patent: 5380833 (1995-01-01), Urdea
Chattoraj et al, "DNA Condenation with Polyamines", J. Mol. Biol. 121, (1978), pp. 327-337.
Ohi et al, "Mapping of Mitochondrial 4S RNA Genes . . . by Electron Microscopy", J. Mol. Biol. 212, (1978), pp. 299-310.
Manuelidis et al, Biol. Abstr. 76(4); Ref. No. 27153; p. 2940.
Bensimon, A. et al., 1994, "Alignment and Sensitive Detection of DNA by a Moving Interface" Science 265: 2096.
Perkins, T.T. et al., 1994, "Direct Observation of Tube-like Motion of a Single Polymer chain", 264: 819-822.
Cohen et al., 1993, "A first-generation physical map of the human genome", Nature 366: 698-701.
Guo et al., 1993, "Sizing of Large DNA Molecules by Hook Formation in a Loose Matrix", J. Biomol. Structure and Dynamics 11: 1-10.
Hansma, H.G. et al., 1993, "Atomic force microscopy of DNA in aqueous solutions", Nucleic Acids Research 21: 505-512.
Karrasch, S. et al., 1993, "Covalent Binding of Biological Samples to Solid Supports for Scanning Probe Microscopy in Buffer Solution" Biophysical J. 65: 2437-2446.
Koob et al., 1992, "RecA-AC: single-site cleavage of plasmids and chromosomes at any predetermined restriction site" Nucleic Acids Res. 20:5831.
Zenhausern et al., 1992, "Imaging of DNA by Scanning Force Microscopy", J. Struct. Biol. 108: 69-73.
Lyubchenko et al., 1992, "Atomic Force Microscopy Imaging of Double Stranded DNA and RNA", J. Biomol. Struct. and Dyn. 10: 589-606.
Bustamante et al., 1992, "Circular DNA Molecules Imaged in Air by Scanning Force Microscopy", Biochemistry 31: 22-26.
van denEngh, et al., 1992, "Estimating Genomic Distance from DNA Sequence Location in Cell Nuclei by a Random Walk Model", Science 257: 1410.
Allison et al., 1992, "Immobilization of DNA for scanning probe microscopy", Proc. Natl. Acad. Sci. USA 89: 10129-10133.
Heng et al., 1992, "High-resolution mapping of mammalian genes by in situ hybridization to free chromatin", Proc. Natl. Acad. Sci. USA 89: 9509.
Maier et al., 1992, "Complete coverage ofthe Schizosaccharomyces pombe genome in yeast artificial chromosomes", Nat. Genet. 1:273.
Guo et al., 1992, "Sizing single DNA molecules", Nature 359:783-784.
Chumakov et al., 1992, "Continuum of overlapping clones spanning the entire human chromosome 21q", Nature 359: 380.
Link, 1991, "Physical Map of the Saccharomyces cerevisiae Genome at 110-Kilobase Resolution", Genetics 127: 681.
Ferrin et al., 1991, "Selective Cleavage of Human DNA: RecA-Assisted Restriction Endonuclease (RARE) Cleavage", Science 254: 1494.
Campbell et al., 1991, "Generation of a nested series of interstitial deletions in yeast artificial chromosomes carrying human DNA", Proc. Natl. Acad. Sci. USA 88: 5744.
Cavalli-Sforza, 1990, "Opinion: How Can One Study Individual Variation for 3 Billion Nucleotides of the Human Genome", Am. J. Hum. Genet. 46: 649.
Koob et al., 1990, "Cleaving Yeast and Escherichia coli Genomes at a single site", Science 250: 271-273.
Lichter et al., 1990, "High-Resolution Mapping of Human Chromosome 11 by in Situ Hybridization with Cosmid Clones" Science 247: 64.
Stallings et al., 1990, "Physical mapping of human chromosomes by repetetive sequence fingerprinting", Proc. Natl. Acad. Sci. USA 87: 6218-6222.
Glazer et al., 1990, "A stable double-stranded DNA-ethidium homodimer complex: Application to picogram fluorescence detection of DNa in agarose gels", Proc. Natl. Acad. Sci. USA 87: 3851.
Schwartz et al., 1989, "ED: pulsed electrophoresis instrument", Nature 342:575-576.
Lawrence et al., 1988, "Sensitive, High-Resolution Chromatin and Chromosome Mapping In Situ: Presence and Orientation of Two Closely Integrated Copies of EBV in a Lymphoma Line", Cell 52:51.
Barlow et al., 1987, "Genetics by gel electrophoresis: the impact of pulsed field gel elctrophoresis on mammalian genetics", Trends in Genetics 3: 167-177.
Burke et al., 1987, "Cloning of Large Segments of Exogenous DNA into Yeast by Means of Artificial Chromosome Vectors", Science 236: 806.
Church and Gilbert, 1984, "Genomic sequencing", Proc. Natl. Acad. Sci. USA 81:1991.
Luckham and Klein, 1984, "Forces between Mica Surfaces Bearing Adsorbed Polyelectrolyte, Poly-L-lysine, in Aqueous Media", Chem. Soc. Faraday Trans. I, 80: 865-878.
Schwartz and Cantor, 1984, "Separation of Yeast Chromosome-Sized DNAs by Pulsed Field Gradient Gel Electrophoresis", Cell 37: 67.
Murray and Szostak, 1983, "Construction of Artificial Chromosome in Yeast", Nature 305: 189-193.
Manuelidis et al., 1982, "High-resolution Mapping of Satellite DNA using Biotin-labeled DNA Probes", J. Cell. Biol. 95: 619.
Matsumoto, et al., 1981, "Light Microscopic Structure of DNA in Solution Studied by the 4',6-Diamidino-2-phenylindole Staining Method", J. Mol. Biol. 132: 501-516.
Gosule and Schellman, 1978, "DNA Condensation with Polyamines", J. Mol. Biol. 121: 311-326.
Porath and Axen, 1976, "Immobilization of Enzymes to Agar, Agarose, and Sephadex Supports", Methods Enzymol. 44: 19.
Smith and Birnstiel, 1976, "A simple method for DNA restriction site mapping", Nucleic Acids Res. 3: 2387-2399.
Massa et al., 1973, "Flow Properties of High-Molecular-Weight DNA Solutions: Viscosity, Recoil, and :Longest Retardation Time", Biopolymers 12:.
Schwartz et al., 1989, "Conformational Dynamics of Individual DNA Molecules During Gel Electrophoresis", Nature 338:520.
Rampino and Chrambach, 1991, "Conformational correlatives of DNA band compression and bidirectional migration during field inversion gel electrophoresis, detected by quantitative video epifluoresence microscopy", Biopolymers 31: 1297-1307.
Romling et al., 1989, "A physical genome map of Pseudomonas aeruginosa", EMBO J. 8(13): 4081-4089.
Smith et al., 1989, "Observation of Individual DNA Molecules Undergoing Gel Electrophoresis", Science 242: 203.
Kucherlapati et al., 1988, Genetic Recombination pp. 92-106.
Zubay, 1988, Biochemistry (Macmillan Publishing Company, New York) pp. 918-919.
Woolf et al., 1988, "Mapping genomic organization by field inversion and two dimensional gel electrophoresis", Nucleic Acids Research 16(9):3863.
Carle et al., 1986, "Electrophoretic Separations of Large DNA Molecules by Periodic Inversion of the Electric Field", Science 232: 65-68.
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