Identification of sortase gene

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving antigen-antibody binding – specific binding protein...

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

Reexamination Certificate

active

10968317

ABSTRACT:
The present invention is a substantially purified sortase-transamidase enzyme from Gram-positive bacteria, such asStaphylococcus aureus. The enzyme having a molecular weight of about 23,539 daltons and catalyzing a reaction that covalently cross-links the carboxyl terminus of a protein having a sorting signal to the peptidoglycan of a Gram-positive bacterium, the sorting signal having: (1) a motif of LPX3X4G (SEQ ID NO: 37) therein; (2) a substantially hydrophobic domain of at least 31 amino acids carboxyl to the motif; and (3) a charged tail region with at least two positively charged residues carboxyl to the substantially hydrophobic domain, at least one of the two positively charged residues being arginine, the two positively charged residues being located at residues 31-33 from the motif, wherein X3is any of the twenty naturally-occurring L-amino acids and X4is selected from the group consisting of alanine, serine, and threonine, and wherein sorting occurs by cleavage between the fourth and fifth residues of the LPX3X4G (SEQ ID NO: 37) motif. Variants of the enzyme, methods for cloning the gene encoding the enzyme and expressing the cloned gene, and methods of use of the enzyme, including for screening for antibiotics and for display of proteins or peptides on the surfaces of Gram-positive bacteria, are also disclosed.

REFERENCES:
patent: 6593114 (2003-07-01), Kunsch et al.
patent: 2002/0061569 (2002-05-01), Haselbeck et al.
patent: 0 786 519 (1997-07-01), None
patent: WO 93/18163 (1993-09-01), None
patent: WO 97/08553 (1997-03-01), None
patent: WO 98/18931 (1998-05-01), None
patent: WO 98/50554 (1998-11-01), None
patent: WO 99/09145 (1999-02-01), None
patent: WO 00/62804 (2000-10-01), None
M. Kuroda, et al., “Whole Genome Sequencing of Meticillin-ResistantStaphylococcus auerus”, The Lancet—357:1225-1240 (2001).
G. P. Smith, “Filamentous Fusion Phage: Novel Expression Vectors that Display Cloned Antigens on the Virion Surface,”Science228:1315-1316 (1985).
J. A. Javitch et al., “Mapping the Binding Site Crevice of the Dopamine D2 Receptor by the Substituted-Cysteine Accessibility Method,”Neuron14:825-831 (1995).
M. H. Akabas & A. Karlin, “Identification of Acetylcholine Receptor Channel-Lining Residues in the M1 Segment of the α-Subunit,”Biochemistry34: 12496-12500 (1995).
D. J. Smith et al., “Simple Alkanethiol Groups for Temporary Blocking of Sulhydryl Groups of Enzymes,”Biochemistry14: 766-771 (1975).
W. N. Valentine & D.E. Paglia, “Effect of Chemical Modification of Sulhydryl Groups of Human Erythrocyte Enzymes,”Am. J. Hematol. 11: 111-124 (1981).
R. P. Novick, “Genetic Systems inStaphylococci,” Meth. Enzymol. 204: 587-636 (1991).
E. Dufour et al., “Peptide Aldehydes and Nitriles as Transition State Analog Inhibitors of Cysteine Proteases,”Biochemistry34: 9136-9143 (1995).
J. O. Westerik & R. Wolfenden, “Aldehydes as Inhibitors of Papain,”J. Biol. Chem. 247:8195-8197 (1972).
L. Björck et al., “Bacterial Growth Blocked by a Synthetic c Peptide Based on the Structure of a Human Proteinase Inhibitor,”Nature337: 385-386 (1989).
P. A. Bartlett & C. K. Marlowe, “Phosphonamidates as Transition-State Analogue Inhibitors of Thermolysin,”Biochemistry22: 4618-4624 (1983).
R. F. Pratt, “Inhibiton of a Class C β-Lactamase by a Specific Phosphonate Monoester,”Science246:917-919 (1989).
J. V. Moroney et al., “The Distance Between Thiol Groups in the γ Subunit of Coupling Factor 1 Influences the Proton Permeability of Thylakoid Membranes,” J. Bioenerget. Biomembr. 14: 347-359 (1982).
A. N. Chatterjee & J. T. Park, “Biosynthesis of Cell Wall Mucopeptide by a Particulate Fraction FromStaphylococcus aureaus,” Proc. Natl. Acad. Sci. USA 51: 9-16 (1964).
M. Matsuhashi et al., “Incorporation of Glycine into the Cell Wall Glycopeptide inStaphylococcus aureus; Role of sRNA and Lipid Intermediates,” Proc. Natl. Acad. Sci. USA 54: 587-594 (1965).
D. B. Smith & K. S. Johnson, “Single-Step Purification of Polypeptides Expressed inEscherichia colias Fusions with Glutathione S-Transferase,”Gene67: 31-40 (1988).
P. Z. Wang et al., “Nucleotide sequence of β-lactamase regulatory genes from staphylococcal plasmid p. 1258,”Nucl. Acids Res. 19:4000-(1991).
P. Recsei et al., “Cloning, Sequence, and Expression of the Lysostaphin Gene fromStaphylococcus simulans,” Proc. Natl. Acad. Sci. USA 84: 1127-1131 (1987).
K. Brocklehurst et al., “Cysteine Proteases,”in New Comprehensive Biochemistry, vol. 16: Hydrolytic Enzymes(A. Neuberger & K. Brocklehurst, eds., Elsevier, New York, 1987), ch. 2, pp. 39-158.
B. L. M. de Yonge et al., “Peptidoglycan Composition of a Highly Methicillin-resistantStaphylococcus aureusStrain,”J. Biol. Chem. 267: 11248-(1992).
U. Kopp et al., “Staphylococcal Peptidoglycan Interpeptide Bridge Biosynthesis: A Novel Antistaphylococcal Target?”Microb. Drug Resist. 2: 29-41 (1996).
D. Boothby et al., “A Rapid, Quantitative, and Selective Estimation of Radioactivity Labeled Peptidoglycan in Gram-Positive Bacteria,”Anal. Biochem. 44: 645-653 (1971).
H. Ton-That et al., “Anchor Structure of Staphylococcal Surface Proteins,”J. Biol. Chem. 272: 22285-22292 (1997).
K. Yokogawa et al., “Mutanolysin, Bacteriolytic Agent for Cariogenic Streptococci: Partial Purification and Properties,”Antimicrob. Agents Chemother. 6: 156-165 (1974).
W. W. Navarre et al., “Multiple Enzymatic Activities of the Murein Hydrolase from Staphyloccal Phage Φ 11,”J. Biol. Chem. 274: 15847-15855 (1999).
W. W. Navarre et al., “Anchor Structure of Staphylococcal Surface Proteins,”J. Biol. Chem. 273: 29135-29142 (1998).
D. J. Smith et al., “Simple Alkanethiol Groups for Temporary Blocking of Sulfhydryl Groups of Enzymes,”Biochemistry14: 766-771 (1975).
W. W. Navarre and O. Schneewind, “Surface Proteins of Gram-Positive Bacteria and Mechanisms of Their Targeting to the Cell Wall Envelope,”Microbiol. Mol. Biol. Rev. 63: 174-229 (1999).
M. K. Yeung et al., “Identification of a Gene Involved in Assembly ofActinomyces naeslundiiT14V Type 2 Fimbriae,”J. Bateriol. 66: 1482-1491 (1998).
M. K. Yeung and J. O. Cisar, “Sequence Homology between the Subunits of Two Immunologically and Functionally Distinct Types of Fimbriae ofActinomycesspp.,”J. Bateriol. 172:2462-2468 (1990).
D. B. Oliver et al., “Azide-resistant mutants ofEscherichia colialter the SecA protein, an azide-sensitive component of the protein export machinery,”Proc. Natl. Acad. Sci. USA 87: 8227-8231 (1990).
I. van de Rijn and V. A. Fischetti, “Immunochemical Analysis of Intact M Protein Secreted From Cell Wall-Less Streptococci,”Infect. Immun. 32: 86-91 (1981).
J. Movitz, “Formation of Extracellular Protein A byStaphylococcus aureus,” Eur. J. Biochem. 68: 291-299 (1976).
P. Lawrence and J. L. Strominger, “Biosynthesis of the Peptidoglycan of Bacterialo Cell Walls,”J. Biol. Chem. 245:3653-3659 (1970).
J. W. Kozarich et al., “Hy7droxylaminolysis of Pencillin Binding Components Is Enzymatically Catalyzed,”J. Biol. Chem. 252: 7525-7529 (1977).
G. T. Wang et al.,Tetrahedron Lett. 31: 6493-6496 (1990).
E. D. Matayoshi et al., “Novel Fluogenic Substrates for Assaying retroviral Proteases by Resonance Energy Transfer,”Science247: 954-958 (1989).
R. Pathak et al., “Sulfhydryl Modification of the Yeast Wbplp Inhibits Oligosaccharyl Transferase Activity,”Biochemistry34: 4179-4185 (1995).
W. W. Navarre & O. Schneewind, “Proteolytic Cleavage and Cell Wall Anchoring at the LPXTG Motif of Surface Proteins in. Gram-Positive Bacteria,”Mol. Microbiol. 14: 115-121 (1994).
C. A. Schindler 

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Identification of sortase gene does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Identification of sortase gene, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Identification of sortase gene will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-3791723

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.