Identification of molecular sequence signatures and methods...

Details Identification of molecular sequence signatures and methods... Identification of molecular sequence signatures and methods...

2006-11-14

2006-11-14

Whisenant, Ethan (Department: 1634)

Chemistry: molecular biology and microbiology

Measuring or testing process involving enzymes or...

Involving nucleic acid

C536S023100, C536S024300

Reexamination Certificate

active

07135285

ABSTRACT:
Novel means and methods for analyzing hybridization data derived from hybridization assays between a target nucleic acid and differently sequenced polynucleotide probes involve selecting probe sets that define reference sequences for sequence signatures and deriving useful data about the nature of the target nucleic acid molecule based on its hybridization to the probes. The methods are useful for determining whether the target contains a nucleic acid or polypeptide sequence signature, whether the target encodes a member of a gene family, or whether the target is derived from one of any number of genes.

REFERENCES:
patent: 5002867 (1991-03-01), Macevicz
patent: 5122599 (1992-06-01), Barnett et al.
patent: 5202231 (1993-04-01), Drmanac et al.
patent: 5436327 (1995-07-01), Southern et al.
patent: 5474796 (1995-12-01), Brennan
patent: 5492806 (1996-02-01), Drmanac et al.
patent: 5503976 (1996-04-01), Mach et al.
patent: 5525464 (1996-06-01), Drmanac et al.
patent: 5525487 (1996-06-01), Gallatin et al.
patent: 5547839 (1996-08-01), Dower et al.
patent: 5667667 (1997-09-01), Southern
patent: 5667972 (1997-09-01), Drmanac et al.
patent: 5695940 (1997-12-01), Drmanac et al.
patent: 5700637 (1997-12-01), Southern
patent: 5744305 (1998-04-01), Fodor et al.
patent: 5807522 (1998-09-01), Brown et al.
patent: 5837832 (1998-11-01), Chee et al.
patent: 5861242 (1999-01-01), Chee et al.
patent: 5902723 (1999-05-01), Dower et al.
patent: 5962221 (1999-10-01), Caetano-Anolles
patent: 5972619 (1999-10-01), Drmanac et al.
patent: 6018041 (2000-01-01), Drmanac et al.
patent: 6025136 (2000-02-01), Drmanac
patent: 6040138 (2000-03-01), Lockhart et al.
patent: 6054270 (2000-04-01), Southern
patent: 6309822 (2001-10-01), Fodor et al.
patent: 6582908 (2003-06-01), Fodor et al.
patent: 0 392 546 (1990-10-01), None
patent: 0 373 303 (1994-08-01), None
patent: 07171113 (1996-06-01), None
patent: 8810400.5 (1989-06-01), None
patent: WO 89/10977 (1989-11-01), None
patent: WO 95/00530 (1995-01-01), None
patent: WO 9511995 (1995-05-01), None
Schena et al. Quantitative Monitoring of Gene Expression Patterns with a Complementary DNA Microarray. Science 270 : 467-470 (Oct. 1995).
Bugawan et al., “A method for typing polymorphism at the HLA-A locus using PCR amplification and immobilized oligonucleotide probes”,Tissue Antigens, vol. 44, 1994, pp. 137-147.
Bentley et al., “The Development and Application of Automated Gridding for Efficient Screening of Yeast and Bacterial Ordered Libraries”,Genomics 12, 1992, pp. 534-541.
Cronin et al., “Amer. Jrnl. Human Genetics”, vol. 55, No. 33, 1994, pp. A217 (supplement).
Cardillo et al.,Jrnl. Of Pathology, citation only, pp. 134A.
Lipshutz et al., “Using Oligonucleotide Probe Arrays to Access Genetic Diversity”,BioTechniques, vol. 19, No. 3, 1995, pp. 442-447.
Maskos et al., “A novel method for the parallel analysis of multiple sequence variants by hybridisation to oligonucleotides”,Nucleic Acids Research, vol. 21, No. 9, 1993, pp. 2267-2268.
Miyada et al., “Detection of cystic fibrosis mutations in a GeneChip™ assay format”,Published Abstracts: Moledular Genetics of Disease, No. 2125, 1994, pp. A362.
Santamaria et al., “TILA Class I Sequence-Based Typing”,Human Immunology 37, 1993, pp. 39-50.
Yershov et al., “DNA analysis and diagnostics on oligonucleotide microchips”,Proc. Natl. Acad. Sci. USA, vol. 93, May 1996, pp. 4913-4918.
Beltz G.A. et al: “Isolation of Multigene Families and Determination of Homologies by Filter Hybridization Methods” Methods in Enzymology, Academic Press Inc, San Diego, CA, US, vol. 100, No. Part B., Dec. 1983, pp. 266-285.
Southern E. M. et al: “Analyzing and Comparing Nucleic Acid Sequences by Hybridization to Arrays of Oligonucleotides: Evaluation Using Experimental Models” Genomics, Academic Press, San Diego, US, vol. 13, 1992, pp. 1008-1017.
Hanks S. K. et al: “Use of Degenerate Oligonucleotide Probes to Identify Clones that Encode Protein Kinases” Methods in Enzymology, Academic Press Inc, San Diego, CA, US, vol. 200, 1991, pp. 525-532.

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