Identification of biological (micro) organisms by detection...

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C435S091100, C435S091200

Reexamination Certificate

active

09817014

ABSTRACT:
A method for identifying or quantifying an organism by a detecting its nucleotide sequence among at least 4 other homologous sequences comprising amplifying nucleic acids from the organism to generate target nucleotide sequences to be detected; contacting the target nucleotide sequences with single stranded capture nucleotide sequences bound by a single predetermined link to an insoluble solid support and discriminating the binding of a target nucleotide sequence specific of an organism with a signal resulting from a hybridization by complementary base pairing between the target nucleotide sequence and its corresponding capture nucleotide sequence is disclosed. The capture nucleotide sequence is bound to the insoluble solid support at a specific location on an array having a density of at least 4 different bound single stranded capture nucleotide sequences/cm2. The location of the signal on the array allows identification or quantification of the organism.

REFERENCES:
patent: 5143854 (1992-09-01), Pirrung et al.
patent: 5312527 (1994-05-01), Mikkelsen et al.
patent: 5445934 (1995-08-01), Fodor et al.
patent: 5451512 (1995-09-01), Apple et al.
patent: 5510270 (1996-04-01), Fodor et al.
patent: 5552270 (1996-09-01), Khrapko et al.
patent: 5587307 (1996-12-01), Alborn, Jr. et al.
patent: 5683872 (1997-11-01), Rudert et al.
patent: 5723591 (1998-03-01), Livak et al.
patent: 5736257 (1998-04-01), Conrad et al.
patent: 5770721 (1998-06-01), Ershov et al.
patent: 5800992 (1998-09-01), Fodor et al.
patent: 5807522 (1998-09-01), Brown et al.
patent: 5821060 (1998-10-01), Arlinghaus et al.
patent: 6207648 (2001-03-01), Waxman et al.
patent: 6228575 (2001-05-01), Gingeras et al.
patent: 6255059 (2001-07-01), Klein et al.
patent: 6306643 (2001-10-01), Gentalen et al.
patent: 6331441 (2001-12-01), Balch et al.
patent: 6488932 (2002-12-01), Boon et al.
patent: 6541617 (2003-04-01), Bamdad et al.
patent: 2002/0102578 (2002-08-01), Dickinson et al.
patent: 2003/0198943 (2003-10-01), Remacle
patent: 2005/0106126 (2005-05-01), Whitlock
patent: 2006/0003308 (2006-01-01), Kullisch
patent: 0511559 (1992-11-01), None
patent: 0476014 (1994-08-01), None
patent: 0535242 (1997-09-01), None
patent: 2318791 (1998-06-01), None
patent: WO 89/11548 (1989-11-01), None
patent: WO 94/05695 (1994-03-01), None
patent: WO 95/11995 (1995-05-01), None
patent: WO 97/10364 (1997-03-01), None
patent: WO 97/27317 (1997-07-01), None
patent: WO 97/27329 (1997-07-01), None
patent: WO 97/29212 (1997-08-01), None
patent: WO 98/11253 (1998-03-01), None
patent: WO 98/28444 (1998-07-01), None
patent: WO 99/16780 (1999-04-01), None
patent: WO 99/35499 (1999-07-01), None
patent: WO 00/72018 (2000-11-01), None
Shchepinov et al. (Nuc. Acid Res. (1997) 25(6): 1155-1161).
Anthoney et al. Rapid diagnosis of bacteremia by universal amplification of 23S ribosomal DNA followed by hybridization to an oligonulcleotide array. Journal of Clinical Microbiology vol. 38:781-788.
Shchepinov et al. 1997. Nucleic Acid Research vol. 25:1155-1161.
Guschin et al. Oligonucleotide microchips as genosensors for determinative and environmental studies in microbiology. Appl Environ Microbiol. Jun. 1997;63(6):2397-402.
Martineau et al. Correlation between the resistance genotype determined by multiplex PCR assays and the antibiotic susceptibility patterns ofStaphylococcus aureusandStaphylococcus epidermidis. Antimicrob Agents Chemother. Feb. 2000;44(2):231-8.
Van Ness et al. A versatile solid support system for oligodeoxynucleotide probe-based hybridization assaysNucleic Acids Research, 19 3345-3350. 1991.
Guo, et al., Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports,Nucleic Acids Research, 22:5465, 1994.
Anthony, et al., Rapid diagnosis of bacteremia by universal amplification of 23S ribosomal DNA followed by hybridization to an oligonucleotide arrayJournal of Clinical Microbiology, 38:781-788.
Wetmur, et al., Kinetics of renaturation of DNAJ. Mol. Biol., 31:319-370, 1968.
Fodor, et al., Multiplexed biochemical assays with biological chips.Nature, 364:555-556, 1993.
Apostolidis, et al., “Genetic differentiation and phylogenetic relationships among Greek Salmo trutta L. (brown trout) populations as revealed by RFLP analysis of PCR amplified mitochondrial DNA segments,” Heredity, (1996) 77(6): 608-618, abstract only.
Musser, “Antimicrobial Agent Resistance in Mycobacteria: Molecular Genetic Insights,” Clinical Microbiol Rev, (1995) 8(4):496-514.
Rose, et al., “Consensus-degenerate hybrid oligonucleotide primers for amplification of distantly related sequences,” Nuc. Acid Res. (1998) 26(7): 1628-1635.
Maskos, U. et al. (1992) “Oligonucleotide hybridizations on glass supports: a novel linker for oligonucleotide synthesis and hybridization properties of oligonucleotides synthesized in situ” Nucleic Acids Research 20:1679-1684.
Schena, M., et al. (1996) “Parallel human genome analysis: microarray-based expression monitoring of 1000 genes” PNAS USA 93:10614-10619.
Wu, D.Y. et al. (1989) “The ligation amplification reaction (LAR)—amplification of specific DNA sequences using sequential rounds of template-dependent ligation” Genomic 4:560-569.
Zammatteo et al. (1997) “Comparison between microwell and bead supports for the detection of human cytomegalovirus amplicons by sandwich hybridization” Analytical Biochemistry 253:180-189.
International Preliminary Eamination Report from co-pending PCT/BE01/00053 dated Mar. 17, 2003, which claims priority to the same European applications as the above-identified application.
Remacle et al. U.S. Appl. No. 10/056,229, filed Jan. 23, 2002, entitled “Identification of a large number of biological (micro)organisms groups at different levels by their detection on a same array” (Listed, but not enclosed).
Office Action from co-pending U.S. Appl. No. 10/056,229, dated Feb. 25, 2003.
Office Action from co-pending U.S. Appl. No. 10/056,229, dated Jan. 2, 2004.
Letter from Jose Remacle to Eric Van Malderen, dated Feb. 24, 2000.
Guschin et al. (1997) “Oligonucleotide microchips as genosensors for determinative and environmental studies in microbiology”Appl. Environ. Microbiol. 63:2397-2402.
Martineau et al. (2000) “Correlation between the resistance genotype determined by multiplex PCR assays and the antibiotic susceptibility patterns ofStaphyl9ococcus aureusandStaphylococcus epidermidis” Antimicrob. Agents Chemother. 44:231-238.
Yershov et al. (1996) “DNA analysis and diagnostics on oligonucleotide microchips”PNAS USA93:4913-4918.

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Identification of biological (micro) organisms by detection... does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Identification of biological (micro) organisms by detection..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Identification of biological (micro) organisms by detection... will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-3791313

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.