Hybridization assay signal enhancement

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Patent

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

536 231, 536 243, 935 76, 935 77, 935 78, C12Q 168, C07H 2102, C07H 2104, C12N 1500

Patent

active

061034746

ABSTRACT:
A signal amplification method for detecting a target nucleic acid analyte having a homopolymeric region and a target sequence includes steps of: contacting an analyte under hybridizing conditions with a multiplicity of reporter probes, each reporter probe including a signal region and an oligonucleotide sequence which is complementary to and capable of forming a stable hybrid with the analyte homopolymeric region to form an analyte:reporter probe hybrid; and forming an analyte:capture probe hybrid by contacting the analyte target sequence with a capture probe under hybridizing conditions. The analyte:reporter probe hybrid may formed prior to contacting the analyte target sequence with the capture probe, so the result of contacting the analyte target sequence with the capture probe results in formation of an analyte:reporter probe:capture probe complex. The analyte:capture probe hybrid may be immobilized on a solid generally planar surface in an array format. Multiple reporter probes may form triple helix structures for further signal enhancement. Multiply-labeled hairpin reporter probes may be employed according to the invention. Also, a kit for carrying out the invention includes one or more capture probes immobilized on a surface, reporter probes each having a signal region and a sequence for binding analyte homopolymer regions, and, optionally, reagents for addition of homopolymer regions to nucleic acid analytes and for carrying out the hybridization reaction.

REFERENCES:
patent: 4563419 (1986-01-01), Ranki et al.
patent: 4751177 (1988-06-01), Stabinsky
patent: 4882269 (1989-11-01), Schneider et al.
patent: 4894325 (1990-01-01), Engelhardt et al.
patent: 5124246 (1992-06-01), Urdea et al.
patent: 5437977 (1995-08-01), Segev
patent: 5474796 (1995-12-01), Brennan
patent: 5478893 (1995-12-01), Ghosh et al.
patent: 5487973 (1996-01-01), Nilsen et al.
patent: 5512439 (1996-04-01), Hornes et al.
patent: 5521298 (1996-05-01), Bahl et al.
patent: 5561043 (1996-10-01), Cantor et al.
patent: 5627030 (1997-05-01), Pandian et al.
patent: 5629156 (1997-05-01), Shah et al.
patent: 5629158 (1997-05-01), Uhlen
patent: 5695936 (1997-12-01), Mandrand et al.
patent: 5726012 (1998-03-01), Bacheler et al.
patent: 5817786 (1998-10-01), Ruth
patent: 5853993 (1998-12-01), Dellinger et al.
Vo, T. et al., "Targeting Pyrimidine Single Strands by Triplex Formation: Structural Optimization of Binding", Nucleic Acids Research, 1995, vol. 23, No. 15, pp. 2937-2944.
Syvanen, A. et al., "Fast Quantification of Nucleic Acid Hybrids by Affinity-Based Hybrid Collection", Nucleic Acids Research, 1986, vol. 14, No. 12, pp. 5037-5048.
Mandenius, C.F. et al., "Reversible and Specific Interaction of Dehydrogenases with a Coenzyme-Coated Surface Continuously Monitored with a Reflectometer", Analytical Biochemistry., 1986, vol. 157, No. 2, pp. 283-288.
Deng, G., et al., "Terminal Transferase: Use in the Tailing of DNA and for in Vitro Mutagenesis", Methods in Enzymology., 1983, vol. 100, pp. 96-116.
Edmonds, M., "Poly(A) Adding Enzymes", Chapter 8, The Enzymes, vol. XV, Nucleic Acids Part B, Paul D. Boyer, Ed., Academic Press, 1982, pp. 217-244.
Schaefer, B.C., "Revolutions in Rapid Amplification of cDNA Ends: New Strategies for Polymerase Chain Reaction Cloning of Full-Length cDNA Ends", Analytical Biochemistry, 1995, vol. 227, pp. 255-273.
Kanaya, E. et al., "Template-Directed Polymerization of Oligoadenylates Using Cyanogen Bromide", Biochemistry, 1986, vol. 25, pp. 7423-7430.
Jacobson, A. et al., "Interrelationships of the Pathways of mRNA Decay and Translation in Eukaryotic Cells", Annu. Rev. Biochem 1996, vol. 65, pp. 693-739.
Han, H. et al., "Sequence-Specific Recognition of Double Helical RNA and RNA-DNA by Triple Helix Formation", Proc. Natl. Acad. Sci. USA, 1993, vol. 90, pp. 3806-3810.
Salles, F.J. et al., "Rapid and Sensitive Analysis of mRNA Polyadenylation States by PCR", PCR Methods and Applications, 1995, vol. 4, p. 317-321.
"Overview of Principles of Hybridization and the Strategy of Nucleic Acid Probe Assays", Chapter 2, Laboratory Techniques in Biochemistry and Molecular Biology, vol. 24, P.C. van der Vliet, Ed., Elsevier, Hybridization with Nucleic Acid Probes, Part 1: Theory and Nucleic Acid Preparation, 1993, pp. 19-78.
Ito, T. et al., "Sequence-Specific DNA Purification by Triplex Affinity Capture", Proc. Natl. Acad. Sci., USA, 1992, vol. 89, pp. 495-498.
Holland, J.A., et al., "Structural Features and Stability of an RNA Triple Helix in Solution", Nucleic Acids Research, 1996, vol. 24, No. 14, pp. 2841-2848.
Shea, R.G. et al., "Thermal Denaturation Profiles and Gel Mobility Shift Analysis of Oligodeoxynucleotide Triplexes", Nucleic Acids Research, 1990, vol. 18, No. 16, pp. 4859-4866.
Maher, J.L. III, et al., "Kinetic Analysis of Oligodeoxyribonucleotide-Directed Triple-Helix Formation on DNA", Biochemistry, 1990, vol. 29, No. 37, pp. 8820-8826.
Moser, H.E. et al., "Sequence-Specific Cleavage of Double Helical DNA by Triple Helix Formation", Science, 1987, vol. 238, pp. 645-650.
Heus, H.A. et al., "Structural Features That Give Rise to the Unusual Stability of RNA Hairpins Containing GNRA Loops", Science, 1991, vol. 253, pp. 191-193.
Williamson, J.R. et al., "Multinuclear NMR Studies of DNA Hairpins. 1. Structure and Dynamics of d(CGCGTTGTTCGCG)", Biochemistry, 1989, vol. 28, No. 7, pp. 2819-2831.
Turner, D.H. et al., "RNA Structure Prediction", Ann. Rev. Biophys. & Biophys. Chem., 1988, vol. 17, pp. 167-192.
Wahl, G.M. et al., "Molecular Hybridization of Immobilized Nucleic Acids: Theoretical Concepts and Practicval Considerations", Methods in Enzymology, 1987, vol. 152, pp. 399-407.
Keller, G.H., Section 1, "Molecular Hybridization Technology", pp. 1-25; Manak, M.M., Section 6, "Hybridization Formats and Detection Procedures", pp. 199-253, DNA Probes, 2nd Edition, Stockton Press.
Matthews, J.A. et al., "Analytical Strategies for the Use of DNA Probes", Analytical Biochemistry, 1988, vol. 169, pp.1-25.
Franzen, L. et al., "Analysis of Clinical Specimens by Hybridisation with Probe Containing Repetitive DNA from Plasmodium Falciparum", The Lancet, Mar. 10, 1984, pp. 525-527.
Chen, G. et al., "A Plasmodium Falciparum-Specific Reverse Target Capture Assay", Molecular and Biochemical Parasitology, 1991, vol. 44, pp. 165-173.
Palva, I. et al, "Nucleotide Sequence of the Promoter and NH.sub.2 -terminal Signal Peptide Region of the .alpha.-amylase Gene from Bacillus Amyloliquefaciens", Gene, 1981, vol. 15, pp. 43-51.

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Hybridization assay signal enhancement does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Hybridization assay signal enhancement, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Hybridization assay signal enhancement will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-2005154

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.