Hybridisation beacon and method of rapid sequence detection...

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

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C536S022100, C536S023100, C536S024300, C435S091200

Reexamination Certificate

active

07998673

ABSTRACT:
A method for detecting specific DNA sequences and discriminating single nucleotide polymorphisms (SNPs) using fluorescently labelled oligonucleotide probes is disclosed. Oligonucleotide probes are labelled with reporter molecules preferentially attached to an internal nucleotide residue. The fluorescence emission of oligonucleotide probes varies significantly when in single-stranded and double-stranded states despite the absence of quencher moieties, allowing reliable detection of complementary DNA targets. The melting temperature of probe/target duplexes permits discrimination of targets that differ by as little as a single nucleotide residue, such that polymorphic targets may be discriminated by fluorescence quantitation and Tm. The hybridisation probes of this invention have been demonstrated to accurately identify homozygous and heterozygous samples using a single fluorescent oligonucleotide and direct investigation of saliva with hybridisation probes permits ultra-rapid genotypic analysis within 35-40 minutes. Target detection and SNP discrimination assays have been achieved in homogeneous, heterogeneous, ‘real-time’ and solid-phase formats.

REFERENCES:
patent: 4889818 (1989-12-01), Gelfand et al.
patent: 5258507 (1993-11-01), Cruickshank et al.
patent: 5480774 (1996-01-01), Hew et al.
patent: 5512439 (1996-04-01), Hornes et al.
patent: 5656493 (1997-08-01), Mullis et al.
patent: 5723591 (1998-03-01), Livak et al.
patent: 5817461 (1998-10-01), Austin et al.
patent: 5849544 (1998-12-01), Harris et al.
patent: 5952202 (1999-09-01), Aoyagi et al.
patent: 6326486 (2001-12-01), Hogan et al.
patent: 6355421 (2002-03-01), Coull et al.
patent: 6451530 (2002-09-01), Hawkins
patent: 6465175 (2002-10-01), Horn et al.
patent: 6635427 (2003-10-01), Wittwer et al.
patent: 6635452 (2003-10-01), Monforte et al.
patent: 6716971 (2004-04-01), Hawkins et al.
patent: 7348141 (2008-03-01), French et al.
patent: 2003/0022177 (2003-01-01), Wittwer et al.
patent: 2008/0171315 (2008-07-01), Gelfand et al.
patent: 0 710 668 (1996-05-01), None
patent: 97/45539 (1997-12-01), None
patent: 98/26093 (1998-06-01), None
patent: 00/79009 (2000-12-01), None
patent: 02/14555 (2002-02-01), None
Ansorge et al. Automated DNA Sequencing: Ultrasensitive Detection of Fluorescent Bands During Electrophoresis. Nucleic Acids Res. 15:4593-4602 (1987).
Bellis et al. Primer Design in Fluorescent DNA Sequencing. Nucleic Acids Res. 18:4951-4952 (1990).
Chehab, F., & Kan, Y. Detection of Specific DNA Sequences by Fluorescence Amplification: A Color Complementation Assay. PNAS 86:9178-9182 (1989).
Chehab, G., & Kan, Y. Blood 72 : 57A. (1988).
Landgraf et al. Quantitative Analysis of Polymerase Chain Reaction (PCR) Products Using Primers Labeled with Biotin and a Fluorescent dye. Anal. Biochem. 193:231-235 (1991).
Murakami et al. Fluorescent-Labeled Oligonucleotide Probes: Detection of Hybrid Formation in Solution by Fluorescence Polarization Spectroscopy Nucleic Acids Res. 19:4097-4102 (1991).
Schubert et al. One-Step Labeling of Oligonucleotides with Fluorescein During Automated Synthesis. Nucleic Acids Res. 18:3427 (1990).
Smith et al. Nucleic Acids Res. 13:2399-2412 (1985).
Voss et al. Automated Fluorescent Sequencing of Cosmid DNA. Nucleic Acids Res. 18 : 1066 (1990).
Voss et al. Automated Fluorescent Sequencing of Lambda DNA. Nucleic Acids Res. 18 : 5314 (1990).
Zimmermann et al. A Simplified Protocol for Fast Plasmid DNA Sequencing. Nucleic Acids Res. 18 : 1067 (1990).
Zimran et al. Detection of the 1226 (Jewish) Mutation for Gaucher's Disease by Color PCR. Am. J. Clin. Pathology 93:788-791 (1990).
Zimran et al. Analysis of Color PCR by Automated DNA Sequencer. Nucleic Acids Res. 17 : 7538 (1989).
Cotton, RGH, Current methods of mutation detection. Mutation Research 285 : 125-144 (1993).
de Silva et al., Review : Monitoring hybridization during polymerase chain reaction. J. of Chromatography B, 741 : 3-13 (2000).
Schubert et al., One-Step labelling of oligonucleotides with fluoresceine during automated synthesis. Nucleic Acids Research 18(11) :3427 (1990).
French et al., HyBeacon probes: a new tool for DNA sequence detection and allele discrimination. Molecular and Cellular Probes 15 : 363-374 (2001).
French et al., Ultra-rapid DNA analysis using HyBeacon probes and direct PCR amplification from saliva. Molecular and Cellular Probes 16 : 319-326 (2002).
A. Murakami et al., “Fluorescent-labelled oligonucleotide probes detection of hybrid formation in solution by fluorescence polarization spectroscopy”, Nucleic Acids Research, vol. 19, No. 15, 1991, pp. 4097-4102.
Bernard et al., “Integrated amplification and detection of the C677T point mutation in the methylene-tetraphydrofolate reductase gene by fluorescence resonance energy transfer and probe melting curves”, Analytical Biochemistry, vol. 255, Jan. 1998, pp. 101-107.
M. Nauck et al., “Rapid, Homogenous Genotyping of the 4G/5G Polymorphism in the Promoter Region of the PAI 1 Gene by Fluorescence Resonance Energy Transfer and Probe Melting Curve”, Clinical Chemistry, vol. 45, No. 8, Aug. 1, 1999, pp. 1141-1147.
Giessendorf et al., “Molecular Beacons: a new approach for semiautomated mutation analysis,” Clinical Chemistry, vol. 44, No. 3, pp. 482-486 (1998).
French et al., HyBeacon TM probes: A new tool for DNA sequence detection and allele discrimination, vol. 15, No. 6, pp. 363-374 (Dec. 2001).
Ishiguro et al., “Fluroescence detection of specific sequence of nucleic acids by oxazole yellow-linked oligonucleotides. Homogeneous quantitative monitoring of in vitro transcription,” Nucleic Acids Research, vol. 24, No. 24, pp. 4992-4997 (1996).
International Preliminary Examining Report, Oct. 21, 2002, in International Application No. PCT/GB01/01430.

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