High throughput method for functionally classifying proteins...

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving antigen-antibody binding – specific binding protein...

Reexamination Certificate

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C435S004000, C435S007400, C435S091500, C435S091500, C435S091500, C436S518000, C530S350000

Reexamination Certificate

active

07122321

ABSTRACT:
The present invention provides a method for functionally classifying a protein that is capable of unfolding due to a thermal change. The method comprises screening one or more of a multiplicity of different molecules for their ability to shift the thermal unfolding curve of the protein, wherein a shift in the thermal unfolding curve indicates that the molecule binds to the protein or affects the stability in a measurable way; generating an activity spectrum for the protein wherein the activity spectrum reflects a set of molecules, from the multiplicity of molecules, that shift the thermal unfolding curve, of the protein and therefore are ligands that bind to the protein, comparing the activity spectrum for the protein to one or more functional reference spectrum lists; and classifying the protein according to the set of molecules in the multiplicity of different molecules that shift the thermal unfolding curve of the protein.

REFERENCES:
patent: 4580895 (1986-04-01), Patel
patent: 4626684 (1986-12-01), Landa
patent: 4628026 (1986-12-01), Gardell et al.
patent: 4774055 (1988-09-01), Wakatake et al.
patent: 4778763 (1988-10-01), Makiguchi et al.
patent: 4859609 (1989-08-01), Dull et al.
patent: 4880750 (1989-11-01), Francoeur
patent: 4963263 (1990-10-01), Kauvar
patent: 5096807 (1992-03-01), Leaback
patent: 5133866 (1992-07-01), Kauvar
patent: 5200504 (1993-04-01), Ghadiri
patent: 5217869 (1993-06-01), Kauvar
patent: 5255976 (1993-10-01), Connelly
patent: 5260207 (1993-11-01), Pantoliano et al.
patent: 5290513 (1994-03-01), Berthold et al.
patent: 5300425 (1994-04-01), Kauvar
patent: 5314825 (1994-05-01), Weyrauch et al.
patent: 5324635 (1994-06-01), Kawase et al.
patent: 5325295 (1994-06-01), Fratantoni et al.
patent: 5338659 (1994-08-01), Kauvar et al.
patent: 5340474 (1994-08-01), Kauvar
patent: 5340747 (1994-08-01), Eden
patent: 5355215 (1994-10-01), Schroeder et al.
patent: 5356784 (1994-10-01), Kauvar
patent: 5383023 (1995-01-01), Walleczek
patent: 5409611 (1995-04-01), Kauvar
patent: 5415839 (1995-05-01), Zaun et al.
patent: 5436718 (1995-07-01), Fernandes et al.
patent: 5463564 (1995-10-01), Agrafiotis et al.
patent: 5496519 (1996-03-01), Schacher
patent: 5506097 (1996-04-01), Potter et al.
patent: 5525300 (1996-06-01), Danssaert et al.
patent: 5557398 (1996-09-01), Wechsler et al.
patent: 5567317 (1996-10-01), Kauvar
patent: 5585277 (1996-12-01), Bowie et al.
patent: 5587293 (1996-12-01), Kauvar et al.
patent: 5589351 (1996-12-01), Harootunian
patent: 5599504 (1997-02-01), Hosoi et al.
patent: 5620901 (1997-04-01), Kauvar
patent: 5631734 (1997-05-01), Stern et al.
patent: 5679582 (1997-10-01), Bowie et al.
patent: 6020141 (2000-02-01), Pantoliano et al.
patent: 6036920 (2000-03-01), Pantoliano et al.
patent: 6214293 (2001-04-01), Pantoliano et al.
patent: 6232085 (2001-05-01), Pantoliano et al.
patent: 6268158 (2001-07-01), Pantoliano et al.
patent: 6268218 (2001-07-01), Pantoliano et al.
patent: 6291191 (2001-09-01), Pantoliano et al.
patent: 6291192 (2001-09-01), Pantoliano et al.
patent: 6303322 (2001-10-01), Pantoliano et al.
patent: 6376180 (2002-04-01), Tomich et al.
patent: 2001/0003648 (2001-06-01), Pantoliano et al.
patent: 0 512 334 (1992-11-01), None
patent: 0 613 007 (1994-08-01), None
patent: 0 640 828 (1995-03-01), None
patent: 0 770 876 (2001-04-01), None
patent: WO 92/03542 (1992-03-01), None
patent: WO 93/14781 (1993-08-01), None
patent: WO 94/05394 (1994-03-01), None
patent: WO 95/18969 (1995-07-01), None
patent: WO 96/23879 (1996-08-01), None
patent: WO 97/09342 (1997-03-01), None
patent: WO 97/14038 (1997-04-01), None
patent: EP 0 770 876 (1997-05-01), None
patent: WO 97/20952 (1997-06-01), None
patent: WO97/20952 (1997-06-01), None
patent: WO 97/42500 (1997-11-01), None
patent: WO 98/15969 (1998-04-01), None
patent: WO 98/39484 (1998-09-01), None
patent: WO 98/15969 (2000-07-01), None
patent: WO 01/46693 (2001-06-01), None
Websters's II New Riverside Dictionary (Riverside Publishing Col. 1994) p. 174 defintions: “biological” and “biology”.
Friguet, B., et al., “Immunochemical analysis of protein conformation,” in:Protein Structure: A Practical Approach, Creighton, T.E., ed., IRL Press at Oxford University Press, Oxford, England, pp. 287-310 (1989).
Grant, S. K. et al., “Use of Protein Unfolding Studies to Determine the Conformational and Dimeric Stabilities of HIV-1 and SIV Proteases,”Biochemistry 31:9491-9501, American Chemical Society (1992).
Hall, L. A., et al., “A High-Performance System for Automation of the Polymerase Chain Reaction,”BioTechniques 10:102-103, 106-112, Eaton Publishing Co. (1991).
Harrington, J.F., “Spectroscopic Analysis of the Unfolding of Transition Metal-Ion Complexes of Human Lactoferrin and Transferrin,”Int. J. Biochem.24:275-280, Pergamon Press (1992).
Highuci, R., et al., “Simultaneous Amplification and Detection of Specific DNA Sequences,”Bio/Technology 10:413-417, Nature Publishing Co. (1992).
Kennedy, M.W. et al., “The ABA-1 Allernen of the Parasitic Nematode Ascaris suum: Fatty Acid and Petinoid Binding Function and Structural: Characterization,”Biochemistry 34:6700-6710, American Chemical Society (1995).
Kikuchi, T., et al., “Measurement of Chemiluminescence from Neutrophils in a 96-Well Microplate using Lumi Box U-800 II,”J. Biolum. Chemilum. 12:149-153, John Wiley & Sons, Ltd. (May 1997).
Nilssen, B., “Proper and Improper Folding of Proteins in the Cellular Environment,”Annu. Rev. Microbiol. 45:607-635, Annual Reviews, Inc. (1991).
Pan, P., “3.Sito Covalent Reactions Trigger Transitions between Open and Closed Conformations of the Trypuophan Synthase Bienzyme Complex,”Biochemistry 35:5002-5013, American Chemical Society (1996).
Randall, L. L., “Peptide Binding by Chaperone SecB: Implications for Recognition of Nonnative Structure,”Science 257:241-245, American Association for the Advancement of Science (1992).
Rosengart, T.K., et al., “Heparin Protects Heparin-Binding Growth Factor-I from Proteoiytic InactivationIn Vitro,” Biochem. Biophys. Res. Commun. 152:432-440, Academic Press, Inc. (1988).
Sackett, D. L. et al., “Local Unfolding and the Stepwise Loss of the Functional Properties of Tubulin,”Biochemistry 33:11868-11878, American Chemical Society (1994).
Tanigaki, N. et al., “Unfolded HLA Class I α Chains and Their Use in an Assay of HLA Class-I-Peptide Binding,”Hum. Immunol. 36:119-127, Elsevier Science (1993).
Volkin, D. B. and Klibanov, A.M., “Mechanism of Thermoinactivation of Immobilized Glucose Isomerase,”Biotech. Bioengin. 33:1104-1111, John Wiley & Sons, Inc. (1989).
Petreila, E., “A Miniaturized Thermal Shift Assay Technology for Directly Evaluating Targets Derived from Genomics,” poste: presented at the Society for Biomolecular Screening Annual Meeting, Edinburgh, Scotland (Sep. 1999).
Molecular Probes, Inc. website search results for “dapoxyl,” 11 pages (Mar. 1998).
Bagshaw, C. F. and D. A. Harris, “Chapter 4. Measurement of Ligand Binding t. Proteins,” inSpectrophotonetry&spectrofluorimetry: a practical approach, Bashford, C. L. and D. A. Harris, eds., IRL Press, Washington, DC, pp. 91-11 (1987).
Barcelo, F. et al , “A Scanning Calorimetric Study of Natural DNA and Antitumoral Anthracycline Antibiotic-DNA Complexes,”Chem. -Biol. Interactions74:315-324, Elsevier Scientific Publishers Ireland Ltd. (1990).
Bell, J.E., “Chapter 4. Fluorescence: Solution Studies,” inSpectroscopy in Biochemistry, vol. 1, J. E. Bell, ed., CPC Press, Inc., Boca Raton, FL, pp. 155-194 1981.
Bergdoll, M., et al., “All in the family: Structural and evolutionary relationships among three modular proteins with diverse functions and variable assembly,”Protein Sci. 7:1661-1670, Cambridge University Press (Aug. 1998).
Blattner, F.R., et al., “The Complete Genome Sequence ofEscherichia coliK-12,ȁ

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