High sensitivity quantitation of peptides by mass spectrometry

Chemistry: analytical and immunological testing – Including sample preparation – Digestion or removing interfering materials

Reexamination Certificate

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C435S004000, C435S007100, C435S039000, C435S173700, C435S174000, C435S243000, C436S008000, C436S017000, C436S086000, C436S161000, C436S174000, C436S501000, C436S513000, C436S518000, C436S536000, C436S538000, C436S540000, C436S541000

Reexamination Certificate

active

07632686

ABSTRACT:
The instant invention provides an economical flow-through method for determining amount of target proteins in a sample. An antibody preparation (whether polyclonal or monoclonal, or any equivalent specific binding agent) is used to capture and thus enrich a specific monitor peptide (a specific peptide fragment of a protein to be quantitated in a proteolytic digest of a complex protein sample) and an internal standard peptide (the same chemical structure but including stable isotope labels). Upon elution into a suitable mass spectrometer, the natural (sample derived) and internal standard (isotope labeled) peptides are quantitated, and their measured abundance ratio used to calculate the abundance of the monitor peptide, and its parent protein, in the initial sample.

REFERENCES:
patent: 5955729 (1999-09-01), Nelson et al.
patent: 6207370 (2001-03-01), Little et al.
patent: 6391649 (2002-05-01), Chait et al.
patent: 6649419 (2003-11-01), Anderson
patent: 6783672 (2004-08-01), Tubbs et al.
patent: 6811689 (2004-11-01), Zhang et al.
patent: 6864099 (2005-03-01), Regnier
patent: 6872575 (2005-03-01), Regnier
patent: 6974704 (2005-12-01), Nelson et al.
patent: 7501286 (2009-03-01), Gygi et al.
patent: 2001/0312279 (2001-08-01), Gygi
patent: 2001/0021535 (2001-09-01), Nelson et al.
patent: 2002/0037532 (2002-03-01), Regnier et al.
patent: 2002/0055186 (2002-05-01), Barry et al.
patent: 2002/0110904 (2002-08-01), Nelson et al.
patent: 2002/0115056 (2002-08-01), Goodlett
patent: 2002/0123055 (2002-09-01), Estell et al.
patent: 2002/0127739 (2002-09-01), Pieper et al.
patent: 2002/0164818 (2002-11-01), Gruber et al.
patent: 2003/0044848 (2003-03-01), Rush et al.
patent: 2003/0129769 (2003-07-01), Regnier
patent: 2004/0029292 (2004-02-01), Joos et al.
patent: 2004/0038307 (2004-02-01), Lee et al.
patent: 2004/0043497 (2004-03-01), Feuer et al.
patent: 2004/0072251 (2004-04-01), Anderson
patent: 2004/0180380 (2004-09-01), Lee et al.
patent: 2004/0214338 (2004-10-01), Borchers
patent: 2004/0229283 (2004-11-01), Gygi et al.
patent: 2005/0064422 (2005-03-01), Barnidge et al.
patent: 2005/0069911 (2005-03-01), Lee et al.
patent: 2005/0202506 (2005-09-01), Cantor
patent: WO 00/67017 (2000-11-01), None
patent: WO 01/86306 (2001-11-01), None
patent: WO03016861 (2003-02-01), None
patent: WO 03016861 (2003-02-01), None
patent: WO 03/102220 (2003-12-01), None
patent: WO 2004/013636 (2004-02-01), None
patent: WO 2006/128492 (2006-12-01), None
Geng et al. 2000. J. of Chromatography. vol. 870:295-313.
Niederkofler et al. 2001. Anal. Chem. vol. 73 : 3294-3299.
Wall et al. 2000. Anal. Chem. vol. 72: 1099-1111.
Zhang et al. 2001. Anal. Chem. vol. 73: 5142-5149.
Geng et al. (J. of Chromatography A, 2000, vol. 870: p. 295-313).
Riggs et al., (J. of Chromatography A, 2001, vol. 924: p. 359-368).
Suckau et al., (PNAS, 1990, vol. 87:pp. 9848-9852).
Geng et al. (J. of Chromatography B, 2001, vol. 752: p. 293-306).
Zhao et al. (PNAS. 1996. vol. 93:4020-4024).
Nelson et al., (1995. Ana. Chem).
Lisek et al, Rapid Communications in Mass Spectrometry, vol. 3 (2): p. 43-46 (1989).
Geng et al, Journal of Chromatography A, vol. 870 p. 295-313 (2000).
Chang et al, Analytical Chemistry, vol. 76 p. 4472-4483 (2004).
Rush et al, Nature Biotechnology, vol. 23 (1) p. 94-101 (2005).
Neiderkofler et al, Analytical Chemistry, vol. 73 p. 3294-3299 (2001).
Labugger et al, Clinical Chemistry, vol. 49 (6) p. 873-879 (2003).
Scrivener et al, Proteomics, vol. 3. p. 122-128 (2003).
Peiper et al, Proteomics, vol. 3 p. 422-432 (2003).
Gerber et al, Proc. Natl. Acad. Sci. USA, vol. 100 (12) p. 6940-6945 (2003).
Warren et al, Analytical Chemistry, vol. 76 p. 4082-4092 (2004).
Raska et al, Journal of the American Society for Mass Spectrometry, vol. 14 p. 1076-1085 (2003).
Li et al, Molecular and Cellular Proteomics, vol. 1.2 p. 157-168 (2002).
Anderson et al, Journal of Proteome Research, vol. 3 p. 228-234 (2004).
Anderson et al, Journal of Proteome Research, vol. 3 p. 235-244 (2004).
Purification, KingFisher 96, New Product Brochure, pp. 28-33, 1996.
Dynabeads, Dynal Biotech, pp. 1-6, 2004.
Adkins, J. N. et al., “Toward a Human Blood Serum Proteome,” Molecular & Cellular Proteomics 1.12, 2002, pp. 947-955, vol. 1.
Amini, A. et al., “Simplification of Complex Tryptic Digests for Capillary Electrophoresis by Affinity Selection of Histidine-Containing Peptides with Immobilised Metal Ion Affinity Chromatography,” Journal of Chromatography B., 2002, pp. 35-44, vol. 772.
Anderson, N. L. et al., “The Human Plasma Proteome, History, Character, and Diagnostic Prospects,” Molecular & Cellular Proteomics 1.11, 2002, pp. 845-867, vol. 1.
Anderson, N. L. et al., “The Human Plasma Proteome, A Nonredundant List Developed by Combination of Four Separate Sources,” Molecular & Cellular Proteomics 3.4, 2004, pp. 311-326, vol. 3.
Anderson, N. G. et al., “Analytical Techniques for Cell Fractions, XIX, The Cyclum: An Automatic System for Cyclic Chromatography,” Analytical Biochemistry, 1975, pp. 159-174, vol. 66.
Anderson, N. G. et al., “Analytical Techniques for Cell Fractions, XX, Cyclic Affinity Chromatography: Principles and Applications,” Analytical Biochemistry, 1975, pp. 371-393, vol. 68.
Anderson, L. et al., “High Resolution Two-Dimensional Electrophoresis of Human Plasma Proteins,” Proc. Natl. Acad. Sci. USA, Dec. 1977, pp. 5421-5425, vol. 74, No. 12.
Anderson, N. L. et al., “Global Approaches to Quantitative Analysis of Gene-Expression Patterns Observed by use of Two-Dimensional Gel Electrophoresis,” Clinical Chemistry, 1984, pp. 2031-2036, vol. 30, No. 12.
Anderson, N. L. et al., “Effects of Toxic Agents at the Protein Level: Quantitative Measurement of 213 Mouse Liver Proteins Following Xenobiotic Treatment,” Fundamental and Applied Toxicology, 1987, pp. 39-50, vol. 8.
Anderson, N. L. et al., “A Two-Dimensional Gel Database of Human Plasma Proteins,” Electropharesis, 1991, pp. 883-906, vol. 12.
Anderson, L. et al., “Effects of Oltipraz and Related Chemoprevention Compounds on Gene Expression in Rat Liver,” 1995, J. Cell Biochem, pp. 108-116, Supplement 22.
Anderson, N. L., et al., “The Effects of Peroxisome Proliferators on Protein Abundances in Mouse Liver,” Toxicology and Applied Pharmacology, 1996, pp. 75-89, vol. 137.
Beynon, R. J. et al., “Multiplexed Absolute Quantification in Proteomics using Artificial QCAT Proteins of Concafenated Signature Peptides,” Nature Methods, Aug. 2005, pp. 587-589, vol. 2, No. 8.
Biswal, S. L. et al., “Micromixing with Linked Chains of Paramagnetic Particles,” Analytical Chemistry, Nov. 1, 2004, pp. 6448-6455, vol. 76, No. 21.
Burroughs, N. J. et al., “Discriminating Self From Nonself with Short Peptides from Large Proteomes,” Immunogenetics, 2004, pp. 311-320, vol. 56.
Chakraborty, A. et al., “Global Internal Standard Technology for Comparative Proteomics,” Journal of Chromatography A, 2002, pp. 173-184, vol. 949.
Doherty, N. S. et al., “Analysis of Changes in Acute-Phase Plasma Proteins in an Acute Inflammatory Response and in Rheumatoid Arthritis Using Two-Dimensional Gel Electrophoresis,” Electrophoresis, 1998, pp. 355-363, vol. 19.
Geng, M. et al., “Proteomics of Glycoproteins Based on Affinity Selection of Glycopeptides from Tryptic Digests,” Journal of Chromatography B, 2001, pp. 293-306, vol. 752.
Hurst, G. B. et al., “Analysis for TNF-α Using Solid-Phase Affinity Capture with Radiolabel and MALDI-MS Detection,” Analytical Chemistry, Oct. 15, 1999, pp. 4727-4733, vol. 71, No. 20.
Ji, J. et al., “Strategy for Qualitative and Quantitative Analysis in Proteomics Based on Signature Peptides,” Journal of Chromatography B, 2000, pp. 197-210, vol. 745.
Kiselar, J. G. et al., “Direct Identification of Protein Epitopes by Mass Spectrometry Without Immobilization of Antibody and Isolation of Antibody—Pep

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