Heterologous production of capreomycin and generation of new...

Organic compounds -- part of the class 532-570 series – Organic compounds – Carbohydrates or derivatives

Reexamination Certificate

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C435S076000, C435S252100

Reexamination Certificate

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08044186

ABSTRACT:
Provided are nucleic acid molecules comprising at least a functional fragment of the capreomycin biosynthetic gene cluster, polypeptides encoded by the cluster and recombinant host cells transformed with any of the nucleic acid molecules disclosed herein. Various methods using any of the vectors or expression cassettes that encode one or more of the gene products of the cluster are provided for heterologous production of capreomycin and capreomycin derivatives.

REFERENCES:
patent: 4551433 (1985-11-01), DeBoer
patent: 5605793 (1997-02-01), Stemmer
patent: 5811238 (1998-09-01), Stemmer et al.
patent: 5830727 (1998-11-01), Wang et al.
patent: 5834252 (1998-11-01), Stemmer et al.
patent: 5837458 (1998-11-01), Minshull et al.
patent: 5848956 (1998-12-01), Grettner
patent: 7326782 (2008-02-01), Thomas et al.
patent: WO 93/16094 (1993-08-01), None
patent: WO 02/059322 (2002-08-01), None
patent: WO 2005/021586 (2005-03-01), None
patent: WO 2006/052499 (2006-05-01), None
Taxonomy Browser (last viewed on Dec. 28, 2010).
Bibb et al. (1985) “Nucleotide Sequences Encoding and Promoting Expression of Three Antibiotic Resistance Genes Indigenous toStreptomyces,” Mol. Gen. Genet. 199:26-36.
Carter et al. (1974) “Biosynthesis of Viomycin. I. Origin of Alpha, Beta-Dianunopropionic Acid and Serine,”Biochemistry13:1221-1227.
Carter et al. (1974) “Biosythesis of Viomycin. II. Origin of Beta-Lysene and Viomycidine,”Biochemistry13:1227-1233.
Chalis et al. (2000) “Predictive, Structure-Based Model of Amino Acid Recognition by Nonribosomal Peptide Synthetase Adenylation Domains,”Chem. Biol. 7:211-224.
Copeland et al. (Apr. 2008) “Molybdopterin-guanine Dinucleotide Biosynthesis Protein B,” NCBI Accession No. ABP62761.
Dirlam et al. (1997) “Cyclic Homopentapeptides 1. Analogs of Tuberactinomycins and Capreomycin with Activity Against Vancomycin-ResistantEnterococciandPasteurella,” Biorg. Med. Chem. Lett. 7(9):1139-1144.
Fei et al. (2007) “Roles of VioG and VioQ in the Incorporation and Modification of the Capreomycidine Residue in the Peptide Antibiotic Viomycin,”J. Nat. Prod. 70:618-622.
Felnagle et al. (Jul. 2007) “Identification of the Biosynthetic Gene Cluster and an Additional Gene for Resistance to the Antituberculosis Drug Capreomycin,”Appl. Environ. Microbiol. 73(13):4162-4170.
GenBank Accession No. AY225601S1, Aug. 29, 2003 [Yin].
GenBank Accession No. AY225601S2, Aug. 29, 2003 [Yin].
GenBank Accession No. AY225601S1, Aug. 5, 2003 [Yin].
GenBank Accession No. AY225601S2, Aug. 5, 2003 [Yin].
GenBank Accession No. AA066425, Aug. 29, 2003 [Yin].
GenBank Accession No. AA066425, Aug. 5, 2003 [Yin].
GenBank Accession No. AA066426, Aug. 29, 2003 [Yin].
GenBank Accession No. AA066427, Aug. 29, 2003 [Yin].
GenBank Accession No. AA066428, Aug. 29, 2003 [Yin].
GenBank Accession No. AAP92509, Aug. 25, 2003 [Thomas].
GenBank Accession No. AAP92510, Aug. 25, 2003 [Thomas].
GenBank Accession No. AY263398, Aug. 25, 2003 [Thomas].
Gould et al. (1992) “Biosynthesis of Capreomycin: 1. Incorporation of Arginine,”J. Org. Chem. 57:5214-5217.
Heifets et al. (2005) “Capreomycin is Active Against non-ReplicatingM. tuberculosis,” Ann. Clin. Microbiol. Antimicrob. 1:6.
International Search Report, Corresponding to International Application No. PCT/US2008/063258, Mailed Aug. 29, 2008.
International Search Report, Corresponding to International Application No. PCT/US2004/027427, Mailed Aug. 11, 2005.
Johansen et al. (2006) “Capreomycin Binds Across the Ribosomal Subunit Interface UsingtylA-Encoded 2′-O-methylations in 16S and 23S rRNAs,”Mol. Cell23:173-182.
Ju et al. (2004) “Conversion of (2S)-Arginine to (2S,3R)-Capreomycidine by VioC and VioD from the Viomycin Biosynthetic Pathway ofStreptomycessp. Strain ATCC11861,”ChemBioChem5:1281-1285.
Kieser et al. (2000) “Introduction of DNA intoStreptomyces,” In;Practical Streptomyces Genetics, The John Innes Foundation, Norwich, UK, pp. 229-252.
Linde II et al. (1997) “Cyclic Homopentapeptides 3. Synthetic Modifications to the Capromycins and Tuberactinomycins: Compounds with Activity Against Methicillin-ResistantStaphylococcus aureusand Vancomycin-ResistantEnterococci,” Biorg. Med. Chem. Lett. 7(9):1149-1152.
Lyssikatos et al. (1997) “Cyclic Homopentapeptides 2. Synthetic Modifications of Viomycin,”Biorg. Med. Chem. Lett. 7(9):1145-1148.
Maus et al. (2005) “Mutation ofTlyAConfers Capreomycin Resistance inMycobacterium tuberculosis,” Antimicrob. Agents Chemother. 49(2):571-577.
Mizuguchi et al. (1974) “Genetic and Biochemical Studies on Drug-Resistant Mutants inMycobacterium smematis,” Jpn. J. Microbiol. 18:457-462.
Mizuguchi et al. (1979) “Interaction Between 30 S Ribosomal Components in a Viomycin Resistant Mutant ofMycobacterium smegmatis,” Microbiol. Immunol. 23:595-604.
Patten et al. (Dec. 1997) “Application of DNA Shuffling to Pharmaceuticals and Vaccines,”Curr. Opin. Biotech. 8(6):724-733.
Saugar et al. (2002) “Identification of a set of Genes Involved in the Biosynthesis of the Aminonucleoside Moiety of Antibiotic A201A fromStreptomyces capreolus,” Eur. J. Biochem. 269:5527-5535.
Skinner et al. (1980) “Resistance to the Antibiotics Viomycin and Capreomycin in theStreptomycesSpecies which Produced them,”J. Gen. Microbiol. 120:95-104.
Smirnova et al. (2001) “Engineered Fatty Acid Biosynthesis inStreptomycesby Altered Catalytic Function of Beta-Ketoacyl-Acyl Carrier Protein Synthase III,”J. Bacteriol. 183(7):2335-2342.
Stachelaus et al. (1999) “The Specificity-Conferring Code of adenylation Domains in Nonribosomal Peptide Synthetases,”Chem. Biol. 6:493-505.
Steffensky et al. (2000) “Identification of the Novobiocin Biosynthetic Gene Cluster ofStreptomyces spheroidsNCIB 11891,”Antimicrob. Agents Chemother. 44:1214-1222.
Tam et al. (1972) “Laboratory Production and14C-Labelling of Viomycin,”J. Antibiot. 25:524-529.
Taniguchi et al. (Aug. 1997) “Molecular Analysis of Kanamycin and Viomycin Resistance inMycobacterium smegmatisby Use of the Conjunction System,”J. Bacteriol. 179:4795-4801.
Thiara et al. (1995) “Analysis of Two Capreomycin-Resistance Determinants fromStreptomyces capreolusand Characterization of the Action of their Products,”Gene167:121-126.
Thiara et al. (Mar. 13, 1996) “Streptomyces capreolusNCIB9801 Capreomycin Phosphotransferase (cph) gene, Complete cds,” Gene Bank Accession No. U13078.
Thomas et al. (2002) Conversion of L-Proline to Pyrrolyl-2-Carboxyl-S-PCP During Undecylprodigiosin and Pyoluteorin Biosynthesism,Chem. Biol. 9:171-184.
Thomas et al (2003) “Deciphering tuberactinomycin Biosynthesis: Isolation, Sequencing, and Annotation of the Viomycin Biosynthetic Gene Cluster,”Antimicrob. Agents Chemother. 47(9):2823-2830.
Trauger et al. (2000) “Heterologous Expression inEscherichia coliof the First Module of the Nonribosomal Peptide Synthetase of Chloroeremomycin, an Vancomycin-Type Glycopeptide Antibotic,”Proc. Nat. Acad. Sci. USA 97(7):3112-3117.
Wang et al. (1993) “Biosynthesis of Capreomycin. 2. Incorporation of L-Serine, L-Alanin, and L-2,3-diaminopropionic Acid,”J. Org. Chem. 58:5176-5180.
Written Opinion, Corresponding to International Application No. PCT/US2008/063258, Mailed Aug. 29, 2008.
Written Opinion, Corresponding to International Application No. PCT/US2004/027427, Mailed Aug. 11, 2005.
Yamada, T. (1987) “The Role of Ribosomes in Sensitivity of Mycobacteria to Tuberactinomycin,”Microbiol. Immunol. 31:179-181.
Yamada et al. (1978) “Viomycin Favours the Formation of 70S Ribosome Couples,”Mol. Gen. Genet. 161:261-265.
Yamada et al. (1976) “Altered Ribosomes in Antibiotic-Resistant Mutants ofMycobacterium smegmatis,” Antimicrob. Agents Chemother. 9(5):817-823.
Yamada et al

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