Genetic diagnosis using multiple sequence variant analysis

Details Genetic diagnosis using multiple sequence variant analysis Genetic diagnosis using multiple sequence variant analysis

2011-07-05

2011-07-05

Lin, Jerry (Department: 1631)

Data processing: measuring, calibrating, or testing

Measurement system in a specific environment

Biological or biochemical

Reexamination Certificate

active

07974789

ABSTRACT:
The present invention is in the field of nucleic acid-based genetic analysis. More particularly, it discloses novel insights into the overall structure of genetic variation in all living species. The structure can be revealed with the use of any data set of genetic variants from a particular locus. The invention is useful to define the subset of variations that are most suited as genetic markers to search for correlations with certain phenotypic traits. Additionally, the insights are useful for the development of algorithms and computer programs that convert genotype data into the constituent haplotypes that are laborious and costly to derive in an experimental way. The invention is useful in areas such as (i) genome-wide association studies, (ii) clinical in vitro diagnosis, (iii) plant and animal breeding, (iv) the identification of micro-organisms.

REFERENCES:
patent: 5869242 (1999-02-01), Kamb
patent: 2005/0277135 (2005-12-01), Zabeau et al.
patent: WO 03/064600 (2003-07-01), None
patent: 2004/076611 (2004-02-01), None
Office Action in U.S. Appl. No. 10/788,260, dated Jul. 10, 2006.
Response in U.S. Appl. No. 10/788,260, dated Sep. 11, 2006.
Office Action in U.S. Appl. No. 10/788,260, dated Nov. 24, 2006.
Response in U.S. Appl. No. 10/788,260, dated Feb. 27, 2007.
Office Action in U.S. Appl. No. 10/788,260, dated May 22, 2007.
Kruglyak, Leonid. “Prospects for Whole-Genome Linkage Disequilibrium Mapping of Common Disease Genes,” (Jun. 1999) vol. 22, pp. 139-144.
Merriam-Webster Online Dictionary “article” http://mw1.merriam-webster.com/dictionary/article (last visited May 17, 2007).
Response in U.S. Appl. No. 10/788,260, dated Jul. 9, 2007.
Office Action in U.S. Appl. No. 10/788,260, dated Feb. 8, 2008.
Response in U.S. Appl. No. 10/788,260, dated May 29, 2008.
Office Action in U.S. Appl. No. 10/788,260, dated Aug. 20, 2008.
Response in U.S. Appl. No. 10/788,260, dated Sep. 9, 2008.
Office Action in U.S. Appl. No. 10/788,260, dated Dec. 12, 2008.
Response in U.S. Appl. No. 10/788,260, dated Jan. 21, 2009.
Office Action in U.S. Appl. No. 10/788,260, dated Apr. 29, 2009.
Response in U.S. Appl. No. 10/788,260, dated Jun. 17, 2009.
Notice of Allowance in U.S. Appl. No. 10/788,260, dated Jun. 24, 2009.
Issue Fee Payment in U.S. Appl. No. 10/788,260, dated Jul. 14, 2009.
Office Action in U.S. Appl. No. 11/077,564, dated Sep. 13, 2007.
Response in U.S. Appl. No. 11/077,564, dated Oct. 11, 2007.
Office Action in U.S. Appl. No. 11/077,564, dated Dec. 27, 2007.
Response and Terminal Disclaimer in U.S. Appl. No. 11/077,564, dated May 29, 2008.
Office Action in U.S. Appl. No. 11/077,564, dated Sep. 18, 2008.
Response in U.S. Appl. No. 11/077,564, dated Jan. 26, 2009.
Office Action in U.S. Appl. No. 11/077,564, dated May 13, 2009.
Response in U.S. Appl. No. 11/077,564, dated Jun. 17, 2009.
Notice of Allowance in U.S. Appl. No. 11/077,564, dated Jul. 9, 2009.
Office Action in U.S. Appl. No. 11/312,088, dated Jun. 23, 2009.
Office Action in JP 2006-501390, dated Nov. 24, 2010.
Gabriel et al., Science, 296:2225-2229 (2002).
Hogan et al., Science, 296:2229-2232 (2002).
Clement et al., Mol. Ecol., 9:1657-1659 (2000).
Collins et al., Plant Physiol., 125:1236-1247 (2001).
Comeron et al., Genetics, 161:389-410 (2002).
Cong et al., Proc. Natl. Acad. Sci. USA, 99921):13606-13611 (2002).
Couzin, 304(5671):671-673 (2004).
Crawford et al., Am. J. Hum. Genet., 74:610-622 (2004).
Cronn et al., Am. J. Botany, 89(4):707-725 (2002).
Cronn et al., Proc. Natl. Acad. Sci. USA, 96(25):14406-14411 (1999).
Della Torre et al., Science, 298:115-117 (2002).
Dennis, Nature, 425(6960):758-759 (2003).
Dermitzakis et al., Mol. Biol. Evol., 20(5):703-714 (2003).
Dingle et al., J. Clinic. Microbiol., 39(1):14-23 (2001).
Dingle et al., J. Clinic. Microbiol., 39(9):3346-3349 (2001).
Drysdale et al., Proc. Natl. ACad. Sci. USA, 97(19):10483-10488 (2000).
Dvornyk et al., Mol. Biol. Evol., 1992):179-188 (2002).
Evans et al., Genetics, 164:621-627 (2003).
Eyre-Walker et al., Proc. Natl. Acad. Sci. USA, 95:4441-4446 (1998).
Fallin et al., Am. J. Hum. Genet., 67:947-959 (2000).
Farnir et al., Genome Res., 10:220-227 (2000).
Ferguson et al., Proc. Natl. Acad. Sci. USA, 98(7):3915-3919 (2001).
Feuillet et al., Ann. Botany, 89:3-10 (2002).
Feuillet et al., Plant Physiol., 125:1304-1313 (2001).
Feuillet et al., Proc. Natl. Acad. Sci. USA, 96:8265-8270 (1999).
Filatov et al., Genetics, 153:1423-1434 (1999).
Fisher et al., Ann. Hum. Genet., 67:377-390 (2003).
Frary et al., Science, 289:85-88 (2000).
Freudenberg Hua et al., Genome Res., 13:2271-2276 (2003).
Fu et al., Proc. Natl. Acad. Sci. USA, 99(14):9573-9578 (2002).
Garris et al., Genetics, 165:759-769 (2003).
Gaut et al., Plant Cell, 15(7):1502-1506 (2003).
Gaut et al., Proc. Natl. Acad. Sci. USA, 90:5095-5099 (1993).
Gaut et al., Proc. Natl. Acad. Sci. USA, 97(13):7008-7015 (2000).
Gazzani et al., Plant Physiol., 132:1107-1114 (2003).
Ge et al., Proc. Natl. Acad. Sci. USA, 96(25):14400-14405 (1999).
Gentile et al., Genetics, 161:1561-1578 (2002).
Glazier et al., Science, 298:2345-2349 (2002).
Gleason et al., Mol. Biol. Evol., 14(7):741-753 (1997).
Graustein et al., Genetics, 161:99-107 (2002).
Griffith et al., J. Mol. Evol., 45:232-237 (1997).
Grisart et al., Genome Res., 12:222-231 (2001).
Grisart et al., Proc. Natl. Acad. Sci. USA, 101(8):2398-2403 (2004).
Guo et al., Plant Cell, 15:1143-1158 (2003).
Hagenblad et al., Genetics, 161:289-298 (2002).
Hamblin et al., Genetics, 153:305-317 (1999).
Hammer et al., Mol. Biol. Evol., 18(7):1189-1203 (2001).
Hanson et al., Genetics, 143:1395-1407 (1996).
Haubold et al., Genetics, 161:1269-1278 (2002).
Hauser et al., Mol. Biol. Evol., 18(9):1754-1763 (2001).
Hayes et al., Genome Res., 13:635-643 (2003).
Hellmann et al., Genome Res., 13:831-837 (2003).
Stumpf, Trends Genet., 18(5):226-228 (2002).
Tang et al., Genetics, 161:447-459 (2002).
Tapper et al., Ann. Hum. Genet., 67:487-494 (2003).
Tarrio et al., Proc. Natl. Acad. Sci. USA, 95:1658-1662 (1998).
Tatarenkov et al., Mol. Phylogenet. Evol., 20(2):321-325 (2001).
Tatarenkov et al., Mol. Phylogenet. Evol., 21(2):327-331 (2001).
Templeton et al., Genetics, 132:619-633 (1992).
Templeton et al., Genetics, 156:1259-1275 (2000).
Tenaillon et al., Genetics, 162:1401-1413 (2002).
Tenaillon et al., Proc. Natl. Acad. Sci. USA, 98(16):9161-9166 (2001).
The International HapMap Consortium, Nature, 426:789-796 (2003).
Tian et al., Proc. Natl. Acad. Sci. USA, 99(17):11525-11530 (2002).
Tiffin et al., Genetics, 158:401-412 (2001).
Tiffin et al., Mol. Biol. Evol., 18(11):2092-2101 (2001).
Torjek et al., Plant J., 36:122-140 (2003).
Twells et al., Genome Res., 13:845-855 (2003).
Verheyen et al., Science, 300:325-329 (2003).
Vigouroux et al., Proc. Natl. Acad. Sci. USA, 99(15):9650-9655 (2002).
Wall et al., Am. J. Hum. Genet., 73:502-515 (2003).
Wall et al., Nat. Rev. Genet., 4(8):587-597 (2003).
Walsh et al., Am. J. Hum. Genet., 73:580-590 (2003).
Wang et al., Genetics, 147:1091-1106 (1997).
Whiltshire et al., Proc. Natl. Acad. Sci. USA, 99(20):12959-12962 (2002).
White et al., Genetics, 153:1455-1462 (1999).
Whitt et al., Proc. Natl. Acad. Sci. USA, 99(20:12959-12962 (2002).
Wicker et al., The Plant Cell, 15:1186-1197 (2003).
Winzeler et al., Genetics, 163:79-89 (2003).
Wright et al., Mol. Biol. Evol., 19(9):1407-1420 (2002).
Wright et al., Mol. Ecol., 12:1247-1263 (2003).
Xiong et al., Front. Biosci., 8:A85-A93 (2003).
Yalcin et al., Proc. Natl. Acad. Sci. USA, 101(26):9734-9739 (2004).
Yang et al., J. Mol. Evol., 48:597-604 (1999).
Yi et al., Genetics, 164:1369-1381 (2003).
Yoshida et al., Genes Genet. Syst., 78:11-21 (2003).
Yu et al., Genetics, 164:1511-1518 (2003).
Zhang et al., Am. J. Hum. Genet., 71:1386-1394 (2002).
Zhang et al., Am. J. Hum. Genet., 73:000-000 (2003).
Zhang et al., Genetics, 162:851-860 (2002).
Zhang et al., Genome Res., 14:908-916 (2004).
Zhang et al., Proc. Natl. Acad. Sci. USA, 99(11):7335-7339 (2002).
Zhang et al., Proc. Natl. Acad. Sci. USA, 99(26):17004-17007 (2002).
Zhu et al., Genetics, 163:1123-1134 (2003).
Zurovcova et al., Genetics, 162

Affiliated with

Also associated with

Rating

Genetic diagnosis using multiple sequence variant analysis does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Genetic diagnosis using multiple sequence variant analysis, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Genetic diagnosis using multiple sequence variant analysis will most certainly appreciate the feedback.

Rate now

Comments { 0 }

Profile ID: LFUS-PAI-O-2670202